## Doctoral Thesis

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#### Faculty / Organisational entity

Three dimensional (3d) point data is used in industry for measurement and reverse engineering. Precise point data is usually acquired with triangulating laser scanners or high precision structured light scanners. Lower precision point data is acquired by real-time structured light devices or by stereo matching with multiple cameras. The basic principle of all these methods is the so-called triangulation of 3d coordinates from two dimensional (2d) camera images.
This dissertation contributes a method for multi-camera stereo matching that uses a system of four synchronized cameras. A GPU based stereo matching method is presented to achieve a high quality reconstruction at interactive frame rates. Good depth resolution is achieved by allowing large disparities between the images. A multi level approach on the GPU allows a fast processing of these large disparities. In reverse engineering, hand-held laser scanners are used for the scanning of complex shaped objects. The operator of the scanner can scan complex regions slower, multiple times, or from multiple angles to achieve a higher point density. Traditionally, computer aided design (CAD) geometry is reconstructed in a separate step after the scanning. Errors or missing parts in the scan prevent a successful reconstruction. The contribution of this dissertation is an on-line algorithm that allows the reconstruction during the scanning of an object. Scanned points are added to the reconstruction and improve it on-line. The operator can detect the areas in the scan where the reconstruction needs additional data.
First, the point data is thinned out using an octree based data structure. Local normals and principal curvatures are estimated for the reduced set of points. These local geometric values are used for segmentation using a region growing approach. Implicit quadrics are fitted to these segments. The canonical form of the quadrics provides the parameters of basic geometric primitives.
An improved approach uses so called accumulated means of local geometric properties to perform segmentation and primitive reconstruction in a single step. Local geometric values can be added and removed on-line to these means to get a stable estimate over a complete segment. By estimating the shape of the segment it is decided which local areas are added to a segment. An accumulated score estimates the probability for a segment to belong to a certain type of geometric primitive. A boundary around the segment is reconstructed using a growing algorithm that ensures that the boundary is closed and avoids self intersections.

In recent years the field of polymer tribology experienced a tremendous development
leading to an increased demand for highly sophisticated in-situ measurement methods.
Therefore, advanced measurement techniques were developed and established
in this study. Innovative approaches based on dynamic thermocouple, resistive electrical
conductivity, and confocal distance measurement methods were developed in
order to in-situ characterize both the temperature at sliding interfaces and real contact
area, and furthermore the thickness of transfer films. Although dynamic thermocouple
and real contact area measurement techniques were already used in similar
applications for metallic sliding pairs, comprehensive modifications were necessary to
meet the specific demands and characteristics of polymers and composites since
they have significantly different thermal conductivities and contact kinematics. By using
tribologically optimized PEEK compounds as reference a new measurement and
calculation model for the dynamic thermocouple method was set up. This method
allows the determination of hot spot temperatures for PEEK compounds, and it was
found that they can reach up to 1000 °C in case of short carbon fibers present in the
polymer. With regard to the non-isotropic characteristics of the polymer compound,
the contact situation between short carbon fibers and steel counterbody could be
successfully monitored by applying a resistive measurement method for the real contact
area determination. Temperature compensation approaches were investigated
for the transfer film layer thickness determination, resulting in in-situ measurements
with a resolution of ~0.1 μm. In addition to a successful implementation of the measurement
systems, failure mechanism processes were clarified for the PEEK compound
used. For the first time in polymer tribology the behavior of the most interesting
system parameters could be monitored simultaneously under increasing load
conditions. It showed an increasing friction coefficient, wear rate, transfer film layer
thickness, and specimen overall temperature when frictional energy exceeded the
thermal transport capabilities of the specimen. In contrast, the real contact area between
short carbon fibers and steel decreased due to the separation effect caused by
the transfer film layer. Since the sliding contact was more and more matrix dominated,
the hot spot temperatures on the fibers dropped, too. The results of this failure
mechanism investigation already demonstrate the opportunities which the new
measurement techniques provide for a deeper understanding of tribological processes,
enabling improvements in material composition and application design.

In the first part of this thesis we study algorithmic aspects of tropical intersection theory. We analyse how divisors and intersection products on tropical cycles can actually be computed using polyhedral geometry. The main focus is the study of moduli spaces, where the underlying combinatorics of the varieties involved allow a much more efficient way of computing certain tropical cycles. The algorithms discussed here have been implemented in an extension for polymake, a software for polyhedral computations.
In the second part we apply the algorithmic toolkit developed in the first part to the study of tropical double Hurwitz cycles. Hurwitz cycles are a higher-dimensional generalization of Hurwitz numbers, which count covers of \(\mathbb{P}^1\) by smooth curves of a given genus with a certain fixed ramification behaviour. Double Hurwitz numbers provide a strong connection between various mathematical disciplines, including algebraic geometry, representation theory and combinatorics. The tropical cycles have a rather complex combinatorial nature, so it is very difficult to study them purely "by hand". Being able to compute examples has been very helpful
in coming up with theoretical results. Our main result states that all marked and unmarked Hurwitz cycles are connected in codimension one and that for a generic choice of simple ramification points the marked cycle is a multiple of an irreducible cycle. In addition we provide computational examples to show that this is the strongest possible statement.

This thesis, whose subject is located in the field of algorithmic commutative algebra and algebraic geometry, consists of three parts.
The first part is devoted to parallelization, a technique which allows us to take advantage of the computational power of modern multicore processors. First, we present parallel algorithms for the normalization of a reduced affine algebra A over a perfect field. Starting from the algorithm of Greuel, Laplagne, and Seelisch, we propose two approaches. For the local-to-global approach, we stratify the singular locus Sing(A) of A, compute the normalization locally at each stratum and finally reconstruct the normalization of A from the local results. For the second approach, we apply modular methods to both the global and the local-to-global normalization algorithm.
Second, we propose a parallel version of the algorithm of Gianni, Trager, and Zacharias for primary decomposition. For the parallelization of this algorithm, we use modular methods for the computationally hardest steps, such as for the computation of the associated prime ideals in the zero-dimensional case and for the standard bases computations. We then apply an innovative fast method to verify that the result is indeed a primary decomposition of the input ideal. This allows us to skip the verification step at each of the intermediate modular computations.
The proposed parallel algorithms are implemented in the open-source computer algebra system SINGULAR. The implementation is based on SINGULAR's new parallel framework which has been developed as part of this thesis and which is specifically designed for applications in mathematical research.
In the second part, we propose new algorithms for the computation of syzygies, based on an in-depth analysis of Schreyer's algorithm. Here, the main ideas are that we may leave out so-called "lower order terms" which do not contribute to the result of the algorithm, that we do not need to order the terms of certain module elements which occur at intermediate steps, and that some partial results can be cached and reused.
Finally, the third part deals with the algorithmic classification of singularities over the real numbers. First, we present a real version of the Splitting Lemma and, based on the classification theorems of Arnold, algorithms for the classification of the simple real singularities. In addition to the algorithms, we also provide insights into how real and complex singularities are related geometrically. Second, we explicitly describe the structure of the equivalence classes of the unimodal real singularities of corank 2. We prove that the equivalences are given by automorphisms of a certain shape. Based on this theorem, we explain in detail how the structure of the equivalence classes can be computed using SINGULAR and present the results in concise form. The probably most surprising outcome is that the real singularity type \(J_{10}^-\) is actually redundant.

This thesis discusses several applications of computational topology to the visualization
of scalar fields. Scalar field data come from different measurements and simulations. The
intrinsic properties of this kind of data, which make the visualization of it to a complicated
task, are the large size and presence of noise. Computational topology is a powerful tool
for automatic feature extraction, which allows the user to interpret the information contained
in the dataset in a more efficient way. Utilizing it one can make the main purpose of
scientific visualization, namely extracting knowledge from data, a more convenient task.
Volume rendering is a class of methods designed for realistic visual representation of 3D
scalar fields. It is used in a wide range of applications with different data size, noise
rate and requirements on interactivity and flexibility. At the moment there is no known
technique which can meet the needs of every application domain, therefore development
of methods solving specific problems is required. One of such algorithms, designed for
rendering of noisy data with high frequencies is presented in the first part of this thesis.
The method works with multidimensional transfer functions and is especially suited for
functions exhibiting sharp features. Compared with known methods the presented algorithm
achieves better visual quality with a faster performance in presence of mentioned
features. An improvement on the method utilizing a topological theory, Morse theory, and
a topological construct, Morse-Smale complex, is also presented in this part of the thesis.
The improvement allows for performance speedup at a little precomputation and memory
cost.
The usage of topological methods for feature extraction on a real world dataset often
results in a very large feature space which easily leads to information overflow. Topology
simplification is designed to reduce the number of features and allow a domain expert
to concentrate on the most important ones. In the terms of Morse theory features are
represented by critical points. An importance measure which is usually used for removing
critical points is called homological persistence. Critical points are cancelled pairwise
according to their homological persistence value. In the presence of outlier-like noise
homological persistence has a clear drawback: the outliers get a high importance value
assigned and therefore are not being removed. In the second part of this thesis a new
importance measure is presented which is especially suited for data with outliers. This
importance measure is called scale space persistence. The algorithm for the computation
of this measure is based on the scale space theory known from the area of computer
vision. The development of a critical point in scale space gives information about its
spacial extent, therefore outliers can be distinguished from other critical points. The usage
of the presented importance measure is demonstrated on a real world application, crater
identification on a surface of Mars.
The third part of this work presents a system for general interactive topology analysis
and exploration. The development of such a system is motivated by the fact that topological
methods are often considered to be complicated and hard to understand, because
application of topology for visualization requires deep understanding of the mathematical
background behind it. A domain expert exploring the data using topology for feature
extraction needs an intuitive way to manipulate the exploration process. The presented
system is based on an intuitive notion of a scene graph, where the user can choose and
place the component blocks to achieve an individual result. This way the domain expert
can extract more knowledge from given data independent on the application domain. The
tool gives the possibility for calculation and simplification of the underlying topological
structure, Morse-Smale complex, and also the visualization of parts of it. The system also
includes a simple generic query language to acquire different structures of the topological
structure at different levels of hierarchy.
The fourth part of this dissertation is concentrated on an application of computational
geometry for quality assessment of a triangulated surface. Quality assessment of a triangulation
is called surface interrogation and is aimed for revealing intrinsic irregularities
of a surface. Curvature and continuity are the properties required to design a visually
pleasing geometric object. For example, a surface of a manufactured body usually should
be convex without bumps of wiggles. Conventional rendering methods hide the regions
of interest because of smoothing or interpolation. Two new methods which are presented
here: curvature estimation using local fitting with B´ezier patches and computation of reflection
lines for visual representation of continuity, are specially designed for assessment
problems. The examples and comparisons presented in this part of the thesis prove the
benefits of the introduced algorithms. The methods are also well suited for concurrent visualization
of the results from simulation and surface interrogation to reveal the possible
intrinsic relationship between them.

A positive affection of human health by nutrition is of high interest, especially for bioactive compounds which are consumed daily in high amounts. This is the case for chlorogenic acids (CGA) ingested by coffee. This molecule class is associated with several possible beneficial health effects observed in vitro that strongly depend on their bioavailability. So far factors influencing bioavailability of CGA such as dose, molecule structure and site of absorption haven´t been investigated sufficiently.
Therefore we performed an in vivo dose-response study with ileostomists, who consumed three different nutritional doses of CGA ingested as instant coffee (4,525 (HIGH); 2,219 (MEDIUM); 1,053 (LOW) μmol CGA). CGA concentrations were determined in ileal fluid, urine and plasma. Furthermore, we conducted an ex vivo study with pig jejunal mucosa using the Ussing chamber model to confirm the in vivo observations. Individual transfer rates of CGA from coffee were investigated, namely: caffeoylquinic acid (CQA), feruloylquinic acid (FQA), caffeic acid (CA), dicaffeoylquinic acid (diCQA) and QA at physiological concentrations (0.2–3.5 mM). Samples were analyzed by HPLC-DAD, -ESI-MS and -ESI-MS/MS.
About ⅔ of the ingested CGA by coffee consumption were available in the colon dose independent. Nevertheless, the results showed that the consumption of higher CGA doses leads to a faster ileal excretion. This corresponds to a plasma AUC0-8h for CGA and metabolites of 4,412 ± 751 nM*h0-8-1 (HIGH), 2,394 ± 637 nM*h0-8-1 (MEDIUM) and 1,782 ± 731 nM*h0-8-1 (LOW) respectively, and a renal excretion of 8.0 ± 4.9% (HIGH), 12.1 ± 6.7% (MEDIUM) and 14.6 ± 6.8% (LOW). Moreover interindividual differences in gastrointestinal transit times were related to differences in total CGA absorption. Thus the variety of patient´s physiology is a decisive bioavailability factor for CGA uptake. This is corroborated ex vivo by a direct proportional relationship of incubation time with absorbed CGA amount.
The consumption of high CGA doses influences the metabolism pattern as an increasing glucuronidation was observed with consumption of increasing CGA doses. However, the different CGA doses have only minor effects on the overall bioavailability which was confirmed ex vivo by a non-saturable passive diffusion of 5-CQA. Furthermore, we identified in the Ussing chamber an active efflux secretion for 5-CQA that decreases its bioavailability and the physicochemical properties of the CGA subgroups as an important bioavailability factor. Transferred amount in increasing order: diCQA, trace amounts; CQA ≈ 1%; CA ≈ 1.5%; FQA ≈ 2%; and QA ≈ 4%.
Altogether, the consumption of increasing CGA doses by coffee had a minor effect on oral bioavailability in ileostomists, such as a slightly increased glucuronidation. Thus, the consumption of high amounts of CGA from coffee in the daily diet is not limiting the CGA concentrations at the site of possible health effects in the human body. However, according to the patient´s physiology the interindividual gastrointestinal transit time which is possibly influenced by dose is influencing CGA bioavailability. Moreover, ex vivo CGA absorption is governed by diffusion as an absorption mechanism corroborating an unsaturable uptake in vivo and by the individual physicochemical properties of CGA.

In this thesis, we combine Groebner basis with SAT Solver in different manners.
Both SAT solvers and Groebner basis techniques have their own strength and weakness.
Combining them could fix their weakness.
The first combination is using Groebner techniques to learn additional binary clauses for SAT solver from a selection of clauses. This combination is first proposed by Zengler and Kuechlin.
However, in our experiments, about 80 percent Groebner basis computations give no new binary clauses.
By selecting smaller and more compact input for Groebner basis computations, we can significantly
reduce the number of inefficient Groebner basis computations, learn much more binary clauses. In addition,
the new strategy can reduce the solving time of a SAT Solver in general, especially for large and hard problems.
The second combination is using all-solution SAT solver and interpolation to compute Boolean Groebner bases of Boolean elimination ideals of a given ideal. Computing Boolean Groebner basis of the given ideal is an inefficient method in case we want to eliminate most of the variables from a big system of Boolean polynomials.
Therefore, we propose a more efficient approach to handle such cases.
In this approach, the given ideal is translated to the CNF formula. Then an all-solution SAT Solver is used to find the projection of all solutions of the given ideal. Finally, an algorithm, e.g. Buchberger-Moeller Algorithm, is used to associate the reduced Groebner basis to the projection.
We also optimize the Buchberger-Moeller Algorithm for lexicographical ordering and compare it with Brickenstein's interpolation algorithm.
Finally, we combine Groebner basis and abstraction techniques to the verification of some digital designs that contain complicated data paths.
For a given design, we construct an abstract model.
Then, we reformulate it as a system of polynomials in the ring \({\mathbb Z}_{2^k}[x_1,\dots,x_n]\).
The variables are ordered in a way such that the system has already been a Groebner basis w.r.t lexicographical monomial ordering.
Finally, the normal form is employed to prove the desired properties.
To evaluate our approach, we verify the global property of a multiplier and a FIR filter using the computer algebra system Singular. The result shows that our approach is much faster than the commercial verification tool from Onespin on these benchmarks.

Continuum Mechanical Modeling of Dry Granular Systems: From Dilute Flow to Solid-Like Behavior
(2014)

In this thesis, we develop a granular hydrodynamic model which covers the three principal regimes observed in granular systems, i.e. the dilute flow, the dense flow and the solid-like regime. We start from a kinetic model valid at low density and extend its validity to the granular solid-like behavior. Analytical and numerical results show that this model reproduces a lot of complex phenomena like for instance slow viscoplastic motion, critical states and the pressure dip in sand piles. Finally we formulate a 1D version of the full model and develop a numerical method to solve it. We present two numerical examples, a filling simulation and the flow on an inclined plane where the three regimes are included.

The present work investigated three important constructs in the field of psychology: creativity, intelligence and giftedness. The major objective was to clarify some aspects about each one of these three constructs, as well as some possible correlations between them. Of special interest were: (1) the relationship between creativity and intelligence - particularly the validity of the threshold theory; (2) the development of these constructs within average and above-average intelligent children and throughout grade levels; and (3) the comparison between the development of intelligence and creativity in above-average intelligent primary school children that participated in a special program for children classified as “gifted”, called Entdeckertag (ET), against an age-class- and-IQ matched control group. The ET is a pilot program which was implemented in 2004 by the Ministry for Education, Science, Youth and Culture of the state of Rhineland-Palatinate, Germany. The central goals of this program are the early recognition of gifted children and intervention, based on the areas of German language, general science and mathematics, and also to foster the development of a child’s creativity, social ability, and more. Five hypotheses were proposed and analyzed, and reported separately within five chapters. To analyze these hypotheses, a sample of 217 children recruited from first to fourth grade, and between the ages of six and ten years, was tested for intelligence and creativity. Children performed three tests: Standard Progressive Matrices (SPM) for the assessment of classical intelligence, Test of Creative Thinking – Drawing Production (TCT-DP) for the measurement of classical creativity, and Creative Reasoning Task (CRT) for the evaluation of convergent and divergent thinking, both in open problem spaces. Participants were divided according to two general cohorts: Intervention group (N = 43), composed of children participating in the Entdeckertag program, and a non-intervention group (N = 174), composed of children from the regular primary school. For the testing of the hypotheses, children were placed into more specific groups according to the particular hypothesis that was being tested. It could be concluded that creativity and intelligence were not significantly related and the threshold theory was not confirmed. Additionally, intelligence accounted for less than 1% of the variance within creativity; moreover, scores on intelligence were unable to predict later creativity scores. The development of classical intelligence and classical creativity throughout grade levels also presented a different pattern; intelligence grew increasingly and continually, whereas creativity stagnated after the third grade. Finally, the ET program proved to be beneficial for classical intelligence after two years of attendance, but no effect was found for creativity. Overall, results indicate that organizations and institutions such as schools should not look solely to intelligence performance, especially when aiming to identify and foster gifted or creative individuals.

In this thesis we studied and investigated a very common but a long existing noise problem and we provided a solution to this problem. The task is to deal with different types of noise that occur simultaneously and which we call hybrid. Although there are individual solutions for specific types one cannot simply combine them because each solution affects the whole speech. We developed an automatic speech recognition system DANSR ( Dynamic Automatic Noisy Speech Recognition System) for hybrid noisy environmental noise. For this we had to study all of speech starting from the production of sounds until their recognition. Central elements are the feature vectors on which pay much attention. As an additional effect we worked on the production of quantities for psychoacoustic speech elements.
The thesis has four parts:
1) The first part we give an introduction. The chapter 2 and 3 give an overview over speech generation and recognition when machines are used. Also noise is considered.
2) In the second part we describe our general system for speech recognition in a noisy environment. This is contained in the chapters 4-10. In chapter 4 we deal with data preparation. Chapter 5 is concerned with very strong noise and its modeling using Poisson distribution. In the chapters 5-8 we deal with parameter based modeling. Chapter 7 is concerned with autoregressive methods in relation to the vocal tract. In the chapters 8 and 9 we discuss linear prediction and its parameters. Chapter 9 is also concerned with quadratic errors, the decomposition into sub-bands and the use of Kalman filters for non-stationary colored noise in chapter 10. There one finds classical approaches as long we have used and modified them. This includes covariance mehods, the method of Burg and others.
3) The third part deals firstly with psychoacoustic questions. We look at quantitative magnitudes that describe them. This has serious consequences for the perception models. For hearing we use different scales and filters. In the center of the chapters 12 and 13 one finds the features and their extraction. The fearures are the only elements that contain information for further use. We consider here Cepstrum features and Mel frequency cepstral coefficients(MFCC), shift invariant local trigonometric transformed (SILTT), linear predictive coefficients (LPC), linear predictive cepstral coefficients (LPCC), perceptual linear predictive (PLP) cepstral coefficients. In chapter 13 we present our extraction methods in DANSR and how they use window techniques And discrete cosine transform (DCT-IV) as well as their inverses.
4) The fourth part considers classification and the ultimate speech recognition. Here we use the hidden Markov model (HMM) for describing the speech process and the Gaussian mixture model (GMM) for the acoustic modelling. For the recognition we use forward algorithm, the Viterbi search and the Baum-Welch algorithm. We also draw the connection to dynamic time warping (DTW). In the rest we show experimental results and conclusions.