The transfer of substrates between to enzymes within a biosynthesis pathway is an effective way to synthesize the specific product and a good way to avoid metabolic interference. This process is called metabolic channeling and it describes the (in-)direct transfer of an intermediate molecule between the active sites of two enzymes. By forming multi-enzyme cascades the efficiency of product formation and the flux is elevated and intermediate products are transferred and converted in a correct manner by the enzymes. During tetrapyrrole biosynthesis several substrate transfer events occur and are prerequisite for an optimal pigment synthesis. In this project the metabolic channeling process during the pink pigment phycoerythrobilin (PEB) was investigated. The responsible ferredoxin-dependent bilin reductases (FDBR) for PEB formation are PebA and PebB. During the pigment synthesis the intermediate molecule 15,16-dihydrobiliverdin (DHBV) is formed and transferred from PebA to PebB. While in earlier studies a metabolic channeling of DHBV was postulated, this work revealed new insights into the requirements of this protein-protein interaction. It became clear, that the most important requirement for the PebA/PebB interaction is based on the affinity to their substrate/product DHBV. The already high affinity of both enzymes to each other is enhanced in the presence of DHBV in the binding pocket of PebA which leads to a rapid transfer to the subsequent enzyme PebB. DHBV is a labile molecule and needs to be rapidly channeled in order to get correctly further reduced to PEB. Fluorescence titration experiments and transfer assays confirmed the enhancement effect of DHBV for its own transfer. More insights became clear by creating an active fusion protein of PebA and PebB and comparing its reaction mechanism with standard FDBRs. This fusion protein was able to convert biliverdin IXα (BV IXα) to PEB similar to the PebS activity, which also can convert BV IXα via DHBV to PEB as a single enzyme. The product and intermediate of the reaction were identified via HPLC and UV-Vis spectroscopy. The results of this work revealed that PebA and PebB interact via a proximity channeling process where the intermediate DHBV plays an important role for the interaction. It also highlights the importance of substrate channeling in the synthesis of PEB to optimize the flux of intermediates through this metabolic pathway.

Increasing costs due to the rising attrition of drug candidates in late developmental phases alongside post-marketing withdrawal of drugs challenge the pharmaceutical industry to further improve their current preclinical safety assessment strategies. One of the most common reasons for the termination of drug candidates is drug induced hepatotoxicity, which more often than not remains undetected in early developmental stages, thus emphasizing the necessity for improved and more predictive preclinical test systems. One reason for the very limited value of currently applied in vitro test systems for the detection of potential hepatotoxic liabilities is the lack of organotypic and tissue-specific physiology of hepatocytes cultured in ordinary monolayer culture formats. The thesis at hand primarily deals with the evaluation of both two- and three-dimensional cell culture approaches with respect to their relative ability to predict the hepatotoxic potential of drug candidates in early developmental phases. First, different hepatic cell models, which are routinely used in pharmaceutical industry (primary human hepatocytes as well as the three cell lines HepG2, HepaRG and Upcyte hepatocytes), were investigated in conventional 2D monolayer culture with respect to their ability to detect hepatotoxic effects in simple cytotoxicity studies. Moreover, it could be shown that the global protein expression levels of all cell lines substantially differ from that of primary human hepatocytes, with the least pronounced difference in HepaRG cells. The introduction of a third dimension through the cultivation of spheroids enables hepatocytes to recapitulate their typical native polarity and furthermore dramatically increases the contact surface of adjacent cells. These differences in cellular architecture have a positive influence on hepatocyte longevity and the expression of drug metabolizing enzymes and transporters, which could be proven via immunofluorescent (IF) staining for at least 14 days in PHH and at least 28 days in HepaRG spheroids, respectively. Additionally, the IF staining of three different phase III transporters (MDR1, MRP2 and BSEP) indicated a bile canalicular network in spheroids of both cell models. A dose-dependent inducibility of important cytochrome P450 isoenzymes in HepaRG spheroids could be shown on the protein level via IF for at least 14 days. CYP inducibility of HepaRG cells cultured in 2D and 3D was compared on the mRNA level for up to 14 days and inducibility was generally lower in 3D compared to 2D under the conditions of this study. In a comparative cytotoxicity study, both PHH and HepaRG spheroids as well as HepaRG monolayers have been treated with five hepatotoxic drugs for up to 14 days and viability was measured at three time points (days 3, 7 and 14). A clear time- and dose-dependent onset of the drug-induced hepatotoxic effects was observable in all conditions tested, indicated by a shift of the respective EC50 value towards lower doses by increasing exposure. The observed effects were most pronounced in PHH spheroids, thus indicating those as the most sensitive cell model in this study. Moreover, HepaRG cells were more sensitive in spheroid culture compared to monolayers, which suggests a potential application of spheroids as long-term test system for the detection of hepatotoxicities with slow onset. Finally, the basal protein expression levels of three antigens (CYP1A2, CYP3A4 and NAT 1/2) were analyzed via Western Blotting in HepaRG cells cultured in three different cell culture formats (2D, 3D and QV) in order to estimate the impact of the cell culture conditions on protein expression levels. In the QV system enables a pump-driven flow of cell culture media, which introduces both mechanical stimuli through shear and molecular stimuli through dynamic circulation to the monolayer. Those stimuli resulted in a clearly positive effect on the expression levels of the selected antigens by an increased expression level in comparison to both 2D and 3D. In contrast, HepaRG spheroids showed time-dependent differences with the overall highest levels at day 7. The studies presented in this thesis delivered valuable information on the increased physiological relevance in dependence on the cell culture format: three-dimensionality as well as the circulation of media lead to a more differentiated phenotype in hepatic cell models. Those cell culture formats are applicable in preclinical drug development in order to obtain more relevant information at early developmental stages and thus help to create a more efficient drug development process. Nonetheless, further studies are necessary to thoroughly characterize, validate and standardize such novel cell culture approaches prior to their routine application in industry.

Mobility has become an integral feature of many wireless networks. Along with this mobility comes the need for location awareness. A prime example for this development are today’s and future transportation systems. They increasingly rely on wireless communications to exchange location and velocity information for a multitude of functions and applications. At the same time, the technological progress facilitates the widespread availability of sophisticated radio technology such as software-defined radios. The result is a variety of new attack vectors threatening the integrity of location information in mobile networks. Although such attacks can have severe consequences in safety-critical environments such as transportation, the combination of mobility and integrity of spatial information has not received much attention in security research in the past. In this thesis we aim to fill this gap by providing adequate methods to protect the integrity of location and velocity information in the presence of mobility. Based on physical effects of mobility on wireless communications, we develop new methods to securely verify locations, sequences of locations, and velocity information provided by untrusted nodes. The results of our analyses show that mobility can in fact be exploited to provide robust security at low cost. To further investigate the applicability of our schemes to real-world transportation systems, we have built the OpenSky Network, a sensor network which collects air traffic control communication data for scientific applications. The network uses crowdsourcing and has already achieved coverage in most parts of the world with more than 1000 sensors. Based on the data provided by the network and measurements with commercial off-the-shelf hardware, we demonstrate the technical feasibility and security of our schemes in the air traffic scenario. Moreover, the experience and data provided by the OpenSky Network allows us to investigate the challenges for our schemes in the real-world air traffic communication environment. We show that our verification methods match all requirements to help secure the next generation air traffic system.

This thesis studies recent trends in logistics that are driven by technological advancements, organizational transformation, and changing customer behavior. Heuristic and Exact Algorithms are developed to solve central vehicle routing problems arising in this context.

Neuronal inhibition is mediated by glycine and/or GABA. Inferior colliculus (IC) neurons receive glycinergic and GABAergic inputs, whereas inhibition in hippocampus (HC) predominantly relies on GABA. Astrocytes heterogeneously express neurotransmitter transporters and are expected to adapt to the local requirements regarding neurotransmitter homeostasis. Here we analyzed the expression of inhibitory neurotransmitter transporters in IC and HC astrocytes using whole-cell patch-clamp and single-cell reverse transcription-PCR. We show that most astrocytes in both regions expressed functional glycine transporters (GlyTs). Activation of these transporters resulted in an inward current (IGly) that was sensitive to the competitive GlyT1 agonist sarcosine. Astrocytes exhibited transcripts for GlyT1 but not for GlyT2. Glycine did not alter the membrane resistance (RM) arguing for the absence of functional glycine receptors (GlyRs). Thus, IGly was mainly mediated by GlyT1. Similarly, we found expression of functional GABA transporters (GATs) in all IC astrocytes and about half of the HC astrocytes. These transporters mediated an inward current (IGABA) that was sensitive to the competitive GAT-1 and GAT-3 antagonists NO711 and SNAP5114, respectively. Accordingly, transcripts for GAT-1 and GAT-3 were found but not for GAT-2 and BGT-1. Only in hippocampal astrocytes, GABA transiently reduced RM demonstrating the presence of GABAA receptors (GABAARs). However, IGABA was mainly not contaminated by GABAAR-mediated currents as RM changes vanished shortly after GABA application. In both regions, IGABA was stronger than IGly. Furthermore, in HC the IGABA/IGly ratio was larger compared to IC. Taken together, our results demonstrate that astrocytes are heterogeneous across and within distinct brain areas. Furthermore, we could show that the capacity for glycine and GABA uptake varies between both brain regions.