### Refine

#### Year of publication

#### Document Type

- Doctoral Thesis (1355) (remove)

#### Language

- German (726)
- English (628)
- Multiple languages (1)

#### Keywords

- Visualisierung (18)
- Simulation (17)
- Stadtplanung (13)
- Apoptosis (12)
- Katalyse (12)
- Finite-Elemente-Methode (11)
- Phasengleichgewicht (11)
- Mobilfunk (10)
- Modellierung (10)
- Eisen (9)

#### Faculty / Organisational entity

- Fachbereich Chemie (312)
- Fachbereich Maschinenbau und Verfahrenstechnik (257)
- Fachbereich Mathematik (235)
- Fachbereich Informatik (157)
- Fachbereich Biologie (104)
- Fachbereich ARUBI (71)
- Fachbereich Elektrotechnik und Informationstechnik (70)
- Fachbereich Bauingenieurwesen (42)
- Fachbereich Sozialwissenschaften (32)
- Fachbereich Raum- und Umweltplanung (25)
- Fachbereich Physik (21)
- Universitätsbibliothek (13)
- Fachbereich Wirtschaftswissenschaften (11)
- Fraunhofer (ITWM) (4)
- Fachbereich Architektur (3)
- Universität (1)

Biological clocks exist across all life forms and serve to coordinate organismal physiology with periodic environmental changes. The underlying mechanism of these clocks is predominantly based on cellular transcription-translation feedback loops in which clock proteins mediate the periodic expression of numerous genes. However, recent studies point to the existence of a conserved timekeeping mechanism independent of cellular transcription and translation, but based on cellular metabolism. These metabolic clocks were concluded based upon the observation of circadian and ultradian oscillations in the level of hyperoxidized peroxiredoxin proteins. Peroxiredoxins are enzymes found almost ubiquitously throughout life. Originally identified as H2O2 scavengers, recent studies show that peroxiredoxins can transfer oxidation to, and thereby regulate, a wide range of cellular proteins. Thus, it is conceivable that peroxiredoxins, using H2O2 as the primary signaling molecule, have the potential to integrate and coordinate much of cellular physiology and behavior with metabolic changes. Nonetheless, it remained unclear if peroxiredoxins are passive reporters of metabolic clock activity or active determinants of cellular timekeeping. Budding yeast possess an ultradian metabolic clock termed the Yeast Metabolic Cycle (YMC). The most obvious feature of the YMC is a high amplitude oscillation in oxygen consumption. Like circadian clocks, the YMC temporally compartmentalizes cellular processes (e.g. metabolism) and coordinates cellular programs such as gene expression and cell division. The YMC also exhibits oscillations in the level of hyperoxidized peroxiredoxin proteins.
In this study, I used the YMC clock model to investigate the role of peroxiredoxins in cellular timekeeping, as well as the coordination of cell division with the metabolic clock. I observed that cytosolic 2-Cys peroxiredoxins are essential for robust metabolic clock function. I provide direct evidence for oscillations in cytosolic H2O2 levels, as well as cyclical changes in oxidation state of a peroxiredoxin and a model peroxiredoxin target protein during the YMC. I noted two distinct metabolic states during the YMC: low oxygen consumption (LOC) and high oxygen consumption (HOC). I demonstrate that thiol-disulfide oxidation and reduction are necessary for switching between LOC and HOC. Specifically, a thiol reductant promotes switching to HOC, whilst a thiol oxidant prevents switching to HOC, forcing cells to remain in LOC. Transient peroxiredoxin inactivation triggered rapid and premature switching from LOC to HOC. Furthermore, I show that cell division is normally synchronized with the YMC and that deletion of typical 2-Cys peroxiredoxins leads to complete uncoupling of cell division from metabolic cycling. Moreover, metabolic oscillations are crucial for regulating cell cycle entry and exit. Intriguingly, switching to HOC is crucial for initiating cell cycle entry whilst switching to LOC is crucial for cell cycle completion and exit. Consequently, forcing cells to remain in HOC by application of a thiol reductant leads to multiple rounds of cell cycle entry despite failure to complete the preceding cell cycle. On the other hand, forcing cells to remain in LOC by treating with a thiol oxidant prevents initiation of cell cycle entry.
In conclusion, I propose that peroxiredoxins – by controlling metabolic cycles, which are in turn crucial for regulating the progression through cell cycle – play a central role in the coordination of cellular metabolism with cell division. This proposition, thus, positions peroxiredoxins as active players in the cellular timekeeping mechanism.

In this thesis we study a variant of the quadrature problem for stochastic differential equations (SDEs), namely the approximation of expectations \(\mathrm{E}(f(X))\), where \(X = (X(t))_{t \in [0,1]}\) is the solution of an SDE and \(f \colon C([0,1],\mathbb{R}^r) \to \mathbb{R}\) is a functional, mapping each realization of \(X\) into the real numbers. The distinctive feature in this work is that we consider randomized (Monte Carlo) algorithms with random bits as their only source of randomness, whereas the algorithms commonly studied in the literature are allowed to sample from the uniform distribution on the unit interval, i.e., they do have access to random numbers from \([0,1]\).
By assumption, all further operations like, e.g., arithmetic operations, evaluations of elementary functions, and oracle calls to evaluate \(f\) are considered within the real number model of computation, i.e., they are carried out exactly.
In the following, we provide a detailed description of the quadrature problem, namely we are interested in the approximation of
\begin{align*}
S(f) = \mathrm{E}(f(X))
\end{align*}
for \(X\) being the \(r\)-dimensional solution of an autonomous SDE of the form
\begin{align*}
\mathrm{d}X(t) = a(X(t)) \, \mathrm{d}t + b(X(t)) \, \mathrm{d}W(t), \quad t \in [0,1],
\end{align*}
with deterministic initial value
\begin{align*}
X(0) = x_0 \in \mathbb{R}^r,
\end{align*}
and driven by a \(d\)-dimensional standard Brownian motion \(W\). Furthermore, the drift coefficient \(a \colon \mathbb{R}^r \to \mathbb{R}^r\) and the diffusion coefficient \(b \colon \mathbb{R}^r \to \mathbb{R}^{r \times d}\) are assumed to be globally Lipschitz continuous.
For the function classes
\begin{align*}
F_{\infty} = \bigl\{f \colon C([0,1],\mathbb{R}^r) \to \mathbb{R} \colon |f(x) - f(y)| \leq \|x-y\|_{\sup}\bigr\}
\end{align*}
and
\begin{align*}
F_p = \bigl\{f \colon C([0,1],\mathbb{R}^r) \to \mathbb{R} \colon |f(x) - f(y)| \leq \|x-y\|_{L_p}\bigr\}, \quad 1 \leq p < \infty.
\end{align*}
we have established the following.
\[\]
\(\textit{Theorem 1.}\)
There exists a random bit multilevel Monte Carlo (MLMC) algorithm \(M\) using
\[
L = L(\varepsilon,F) = \begin{cases}\lceil{\log_2(\varepsilon^{-2}}\rceil, &\text{if} \ F = F_p,\\
\lceil{\log_2(\varepsilon^{-2} + \log_2(\log_2(\varepsilon^{-1}))}\rceil, &\text{if} \ F = F_\infty
\end{cases}
\]
and replication numbers
\[
N_\ell = N_\ell(\varepsilon,F) = \begin{cases}
\lceil{(L+1) \cdot 2^{-\ell} \cdot \varepsilon^{-2}}\rceil, & \text{if} \ F = F_p,\\
\lceil{(L+1) \cdot 2^{-\ell} \cdot \max(\ell,1) \cdot \varepsilon^{-2}}\rceil, & \text{if} \ F=f_\infty
\end{cases}
\]
for \(\ell = 0,\ldots,L\), for which exists a positive constant \(c\) such that
\begin{align*}
\mathrm{error}(M,F) = \sup_{f \in F} \bigl(\mathrm{E}(S(f) - M(f))^2\bigr)^{1/2} \leq c \cdot \varepsilon
\end{align*}
and
\begin{align*}
\mathrm{cost}(M,F) = \sup_{f \in F} \mathrm{E}(\mathrm{cost}(M,f)) \leq c \cdot \varepsilon^{-2} \cdot \begin{cases}
(\ln(\varepsilon^{-1}))^2, &\text{if} \ F=F_p,\\
(\ln(\varepsilon^{-1}))^3, &\text{if} \ F=F_\infty
\end{cases}
\end{align*}
for every \(\varepsilon \in {]0,1/2[}\).
\[\]
Hence, in terms of the \(\varepsilon\)-complexity
\begin{align*}
\mathrm{comp}(\varepsilon,F) = \inf\bigl\{\mathrm{cost}(M,F) \colon M \ \text{is a random bit MC algorithm}, \mathrm{error}(M,F) \leq \varepsilon\bigr\}
\end{align*}
we have established the upper bound
\begin{align*}
\mathrm{comp}(\varepsilon,F) \leq c \cdot \varepsilon^{-2} \cdot \begin{cases}
(\ln(\varepsilon^{-1}))^2, &\text{if} \ F=F_p,\\
(\ln(\varepsilon^{-1}))^3, &\text{if} \ F=F_\infty
\end{cases}
\end{align*}
for some positive constant \(c\). That is, we have shown the same weak asymptotic upper bound as in the case of random numbers from \([0,1]\). Hence, in this sense, random bits are almost as powerful as random numbers for our computational problem.
Moreover, we present numerical results for a non-analyzed adaptive random bit MLMC Euler algorithm, in the particular cases of the Brownian motion, the geometric Brownian motion, the Ornstein-Uhlenbeck SDE and the Cox-Ingersoll-Ross SDE. We also provide a numerical comparison to the corresponding adaptive random number MLMC Euler method.
A key challenge in the analysis of the algorithm in Theorem 1 is the approximation of probability distributions by means of random bits. A problem very closely related to the quantization problem, i.e., the optimal approximation of a given probability measure (on a separable Hilbert space) by means of a probability measure with finite support size.
Though we have shown that the random bit approximation of the standard normal distribution is 'harder' than the corresponding quantization problem (lower weak rate of convergence), we have been able to establish the same weak rate of convergence as for the corresponding quantization problem in the case of the distribution of a Brownian bridge on \(L_2([0,1])\), the distribution of the solution of a scalar SDE on \(L_2([0,1])\), and the distribution of a centered Gaussian random element in a separable Hilbert space.

Untersuchungen zur Struktur und Spezifität der Phycobiliproteinlyase CPES aus Guillardia theta
(2020)

Cryptophyten verwenden neben Chlorophyll zusätzliche Lichtsammelproteine für die Photo-synthese – die Phycobiliproteine (PBP). In Cyanobakterien, Rotalgen und Glaukophyten sind PBP ebenfalls ubiquitär verbreitet. Für den Zweck der Lichtsammlung tragen die PBP- Untereinheiten kovalent gebundene offenkettige Tetrapyrrol-Chromophore an konservierten Cysteinresten. Diese Phycobiline sind in der Lage, grünes Licht zu absorbieren und es für die Photosynthese zur Verfügung zu stellen. Die Fähigkeit zur Photosynthese erlangten Crypto-phyten bei der sekundären Endosymbiose durch Aufnahme einer früheren Rotalge. Die evolutionäre Entwicklung brachte schließlich modifizierte PBP hervor. In Gegensatz zu ande-ren Organismen liegen die PBP in Cryptophyten in löslicher Form im Thylakoidlumen des Plastiden vor. Cryptophyten besitzen lediglich einen Typ an PBP, Guillardia theta verwendet Phycoerythrin PE545. Die α-Untereinheiten sind jeweils mit einem Molekül 15,16-Dihydrobi-liverdin (DHBV) und die β-Untereinheiten mit drei Molekülen Phycoerythrobilin (PEB) chromophoryliert. Die Chromophorylierung cryptophytischer Apo-PBP ist bisher wenig un-tersucht und verstanden. Aus Cyanobakterien ist jedoch bekannt, dass die Chromophorylie-rung häufig mit Hilfe von Phycobiliproteinlyasen (PBP Lyasen) stattfindet, welche die Phyco-bilinübertragung unterstützen.
In der vorliegenden Arbeit erfolgte die funktionelle Charakterisierung der eukaryotischen S-Typ-PBP Lyase GtCPES aus G. theta. Mittels Fluoreszenzspektroskopie und Zink-induzierter Fluoreszenz konnte gezeigt werden, dass GtCPES den Transfer von 3(Z)-PEB auf Cys82 der PBP-β-Untereinheit aus Prochlorococcus marinus MED4 (PmCpeB) vermittelt. An der PEB-Bindung sowie am -Transfer beteiligte Aminosäuren wurden mit Hilfe Zielgerichteter Muta-genese identifiziert. Anhand spektroskopischer Binde- und Transferstudien mit den Protein-varianten wurden drei Aminosäuren in der Ligandenbindetasche ermittelt, die relevant für die Bindung sind (Trp69, Glu136, Glu168). Diese koordinieren vermutlich PEB in der Bindetasche und stabilisieren somit die Konformation. Zusätzlich konnten zwei im PEB-Transfer involvierte Aminosäuren eindeutig identifiziert werden (Trp75, Ser150). Trp75 kommt dabei eine essenzielle Bedeutung für den Transfer zu. Des Weiteren konnte gezeigt werden, dass Met67 für die auf PEB und DHBV beschränkte Substratspezifität von GtCPES verantwortlich ist. Die Variante GtCPES_M67A bindet sowohl PEB als auch das rigide Phycocyanobilin (PCB) stabil unter Bildung eines farbigen Komplexes in vitro und in vivo in Escherichia coli. GtCPES_M67A scheint zudem in der Lage zu sein, PCB auf geeignete Apo-Proteine zu transfe-rieren. Neben der sterischen und elektrostatischen Umgebung entscheidet damit zusätzlich die Substratspezifität der PBP Lyase über die gebundenen Chromophore am PBP.

Activity recognition has continued to be a large field in computer science over the last two decades. Research questions from 15 years ago have led to solutions that today support our daily lives. Specifically, the success of smartphones or more recent developments of other smart devices (e.g., smart-watches) is rooted in applications that leverage on activity analysis and location tracking (fitness applications and maps). Today we can track our physical health and fitness and support our physical needs by merely owning (and using) a smart-phone. Still, the quality of our lives does not solely rely on fitness and physical health but also more increasingly on our mental well-being. Since we have learned how practical and easy it is to have a lot of functions, including health support on just one device, it would be specifically helpful if we could also use the smart-phone to support our mental and cognitive health if need be.
The ultimate goal of this work is to use sensor-assisted location and motion analysis to support various aspects of medically valid cognitive assessments.
In this regard, this thesis builds on Hypothesis 3: Sensors in our ubiquitous environment can collect information about our cognitive state, and it is possible to extract that information. In addition, these data can be used to derive complex cognitive states and to predict possible pathological changes in humans. After all, not only is it possible to determine the cognitive state through sensors but also to assist people in difficult situations through these sensors.
Thus, in the first part, this thesis focuses on the detection of mental state and state changes.
The primary purpose is to evaluate possible starting points for sensor systems in order to enable a clinically accurate assessment of mental states. These assessments must work on the condition that a developed system must be able to function within the given limits of a real clinical environment.
Despite the limitations and challenges of real-life deployments, it was possible to develop methods for determining the cognitive state and well-being of the residents. The analysis of the location data provides a correct classification of cognitive state with an average accuracy of 70% to 90%.
Methods to determine the state of bipolar patients provide an accuracy of 70-80\% for the detection of different cognitive states (total seven classes) using single sensors and 76% for merging data from different sensors. Methods for detecting the occurrence of state changes, a highlight of this work, even achieved a precision and recall of 95%.
The comparison of these results with currently used standard methods in psychiatric care even shows a clear advantage of the sensor-based method. The accuracy of the sensor-based analysis is 60% higher than the accuracy of the currently used methods.
The second part of this thesis introduces methods to support people’s actions in stressful situations on the one hand and analyzes the interaction between people during high-pressure activities on the other.
A simple, acceleration based, smartwatch instant feedback application was used to help laypeople to learn to perform CPR (cardiopulmonary resuscitation) in an emergency on the fly.
The evaluation of this application in a study with 43 laypersons showed an instant improvement in the CPR performance of 50%. An investigation of whether training with such an instant feedback device can support improved learning and lead to more permanent effects for gaining skills was able to confirm this theory.
Last but not least, with the main interest shifting from the individual to a group of people at the end of this work, the question: how can we determine the interaction between individuals within a group of people? was answered by developing a methodology to detect un-voiced collaboration in random ad-hoc groups. An evaluation with data retrieved from video footage provides an accuracy of up to more than 95%, and even with artificially introduced errors rates of 20%, still an accuracy of 70% precision, and 90% recall can be achieved.
All scenarios in this thesis address different practical issues of today’s health care. The methods developed are based on real-life datasets and real-world studies.

Destructive diseases of the lung like lung cancer or fibrosis are still often lethal. Also in case of fibrosis in the liver, the only possible cure is transplantation.
In this thesis, we investigate 3D micro computed synchrotron radiation (SR\( \mu \)CT) images of capillary blood vessels in mouse lungs and livers. The specimen show so-called compensatory lung growth as well as different states of pulmonary and hepatic fibrosis.
During compensatory lung growth, after resecting part of the lung, the remaining part compensates for this loss by extending into the empty space. This process is accompanied by an active vessel growing.
In general, the human lung can not compensate for such a loss. Thus, understanding this process in mice is important to improve treatment options in case of diseases like lung cancer.
In case of fibrosis, the formation of scars within the organ's tissue forces the capillary vessels to grow to ensure blood supply.
Thus, the process of fibrosis as well as compensatory lung growth can be accessed by considering the capillary architecture.
As preparation of 2D microscopic images is faster, easier, and cheaper compared to SR\( \mu \)CT images, they currently form the basis of medical investigation. Yet, characteristics like direction and shape of objects can only properly be analyzed using 3D imaging techniques. Hence, analyzing SR\( \mu \)CT data provides valuable additional information.
For the fibrotic specimen, we apply image analysis methods well-known from material science. We measure the vessel diameter using the granulometry distribution function and describe the inter-vessel distance by the spherical contact distribution. Moreover, we estimate the directional distribution of the capillary structure. All features turn out to be useful to characterize fibrosis based on the deformation of capillary vessels.
It is already known that the most efficient mechanism of vessel growing forms small torus-shaped holes within the capillary structure, so-called intussusceptive pillars. Analyzing their location and number strongly contributes to the characterization of vessel growing. Hence, for all three applications, this is of great interest. This thesis provides the first algorithm to detect intussusceptive pillars in SR\( \mu \)CT images. After segmentation of raw image data, our algorithm works automatically and allows for a quantitative evaluation of a large amount of data.
The analysis of SR\( \mu \)CT data using our pillar algorithm as well as the granulometry, spherical contact distribution, and directional analysis extends the current state-of-the-art in medical studies. Although it is not possible to replace certain 3D features by 2D features without losing information, our results could be used to examine 2D features approximating the 3D findings reasonably well.

Die Versorgungsaufgaben für Niederspannungsnetze werden sich in den kommenden Jahrzehnten durch die weitere Verbreitung von Photovoltaikanlagen, Wärmepumpenheizungen und Elektroautomobilen gegenüber denen des Jahres 2018 voraussichtlich stark ändern. In der Praxis verbreitete Planungsgrundsätze für den Neubau von Niederspannungsnetzen sind veraltet, denn sie stammen vielfach in ihren Grundzügen aus Zeiten, in denen die neuen Lasten und Einspeisungen nicht erwartet und dementsprechend nicht berücksichtigt wurden. Der Bedarf für neue Planungsgrundsätze fällt zeitlich mit der Verfügbarkeit regelbarer Ortsnetztransformatoren (rONT) zusammen, die zur Verbesserung der Spannungsverhältnisse im Netz eingesetzt werden können. Die hier entwickelten neuen Planungsgrundsätze erfordern für ländliche und vorstädtische Versorgungsaufgaben (nicht jedoch für städtische Versorgungsaufgaben) den rONT-Einsatz, um die hohen erwarteten Leistungen des Jahres 2040 zu geringen Kosten beherrschen zu können. Eine geeignete rONT-Standardregelkennlinie wird angegeben. In allen Fällen werden abschnittsweise parallelverlegte Kabel mit dem Querschnitt 240 mm² empfohlen.

Function of two redox sensing kinases from the methanogenic archaeon Methanosarcina acetivorans
(2019)

MsmS is a heme-based redox sensor kinase in Methanosarcina acetivorans consisting of alternating PAS and GAF domains connected to a C-terminal kinase domain. In addition to MsmS, M. acetivorans possesses a second kinase, MA0863 with high sequence similarity. Interestingly, MA0863 possesses an amber codon in its second GAF domain, encoding for the amino acid pyrrolysine. Thus far, no function of this residue has been resolved. In order to examine the heme iron coordination in both proteins, an improved method for the production of heme proteins was established using the Escherichia coli strain Nissle 1917. This method enables the complete reconstitution of a recombinant hemoprotein during protein production, thereby resulting in a native heme coordination. Analysis of the full-length MsmS and MA0863 confirmed a covalently bound heme cofactor, which is connected to one conserved cysteine residue in each protein. In order to identify the coordinating amino acid residues of the heme iron, UV/vis spectra of different variants were measured. These studies revealed His702 in MsmS and the corresponding His666 in MA0863 as the proximal heme ligands. MsmS has previously been described as a heme-based redox sensor. In order to examine whether the same is true for MA0863, redox dependent kinase assays were performed. MA0863 indeed displays redox dependent autophosphorylation activity, which is independent of heme ligands and only observed under oxidizing conditions. Interestingly, autophosphorylation was shown to be independent of the heme cofactor but rather relies on thiol oxidation. Therefore, MA0863 was renamed in RdmS (redox dependent methyltransferase-associated sensor). In order to identify the phosphorylation site of RdmS, thin layer chromatography was performed identifying a tyrosine as the putative phosphorylation site. This observation is in agreement with the lack of a so-called H-box in typical histidine kinases. Due to their genomic localization, MsmS and RdmS were postulated to form two-component systems (TCS) with vicinal encoded regulator proteins MsrG and MsrF. Therefore, protein-protein interaction studies using the bacterial adenylate two hybrid system were performed suggesting an interaction of RdmS and MsmS with the three regulators MsrG/F/C. Due to these multiple interactions these signal transduction pathways should rather be considered multicomponent system instead of two component systems.

Ranking lists are an essential methodology to succinctly summarize outstanding items, computed over database tables or crowdsourced in dedicated websites. In this thesis, we propose the usage of automatically generated, entity-centric rankings to discover insights in data. We present PALEO, a framework for data exploration through reverse engineering top-k database queries, that is, given a database and a sample top-k input list, our approach, aims at determining an SQL query that returns results similar to the provided input when executed over the database. The core problem consist of finding selection predicates that return the given items, determining the correct ranking criteria, and evaluating the most promising candidate queries first. PALEO operates on subset of the base data, uses data samples, histograms, descriptive statistics, and further proposes models that assess the suitability of candidate queries which facilitate limitation of false positives. Furthermore, this thesis presents COMPETE, a novel approach that models and computes dominance over user-provided input entities, given a database of top-k rankings. The resulting entities are found superior or inferior with tunable degree of dominance over the input set---a very intuitive, yet insightful way to explore pros and cons of entities of interest. Several notions of dominance are defined which differ in computational complexity and strictness of the dominance concept---yet, interdependent through containment relations. COMPETE is able to pick the most promising approach to satisfy a user request at minimal runtime latency, using a probabilistic model that is estimating the result sizes. The individual flavors of dominance are cast into a stack of algorithms over inverted indices and auxiliary structures, enabling pruning techniques to avoid significant data access over large datasets of rankings.

Wine and alcoholic fermentations are complex and fascinating ecosystems. Wine aroma is shaped by the wine’s chemical compositions, in which both microbes and grape constituents play crucial roles. Activities of the microbial community impact the sensory properties of the final product, therefore, the characterisation of microbial diversity is essential in understanding and predicting sensory properties of wine. Characterisation has been challenging with traditional approaches, where microbes are isolated and therefore analyzed outside from their natural environment. This causes a bias in the observed microbial composition structure. In addition, true community interactions cannot be studied using isolates. Furthermore, the multiplex ties between wine chemical and sensory compositions remain evasive due to their multivariate and nonlinear nature. Therefore, the sensorial outcome arising from different microbial communities has remained inconclusive.
In this thesis, microbial diversity during Riesling wine fermentations is investigated with the aim to understand the roles of microbial communities during fermentations and their links to sensory properties. With the advancement of high-throughput tools based ‘omic methods, such as next-generation sequencing (NGS) technologies, it is now possible to study microbial communities and their functions without isolation by culturing. This developing field and its potential to wine community is reviewed in Chapter 1. The standardisation of methods remains challenging in the field. DNA extraction is a key step in capturing the microbial diversity in samples for generating NGS data, therefore, DNA extraction methods are evaluated in Chapter 2. In Chapter 3, machine learning is utilized in guiding raw data mining generated by the untargeted GC-MS analysis. This step is crucial in order to take full advantages of the large scope of data generated by ‘omic methods. These lay a solid foundation for Chapters 4 and 5 where microbial community structures and their outputs - chemical and sensory compositions are studied by using approaches and tools based on multiple ‘omics methods.
The results of this thesis show first that by using novel statistical approaches, it is possible to extract meaningful information from heterogeneous biological, chemical and sensorial data. Secondly, results suggest that the variation in wine aroma, might be related
to microbial interactions taking place not only inside a single community, but also the
IV
interactions between communities, such as vineyard and winery communities. Therefore, the true sensory expression of terroir might be masked by the interaction between two microbial communities, although more work is needed to uncover this potential relationship. Such potential interaction mechanisms were uncovered between non- Saccharomyces yeast and bacteria in this work and unexpected novel bacterial growth was observed during alcohol fermentation. This suggests new layers in understanding of wine fermentations. In the future, multi-omic approaches could be applied to identify biological pathways leading to specific wine aroma as well as investigate the effects upon specific winemaking conditions. These results are relevant not just for the wine industry, but also to other industries where complex microbial networks are important. As such, the approaches presented in this thesis might find widely use in the food industry.

Carotenoids are organic lipophilic tetraterpenes ubiquitously present in Nature and found across the three domains of life (Archaea, Bacteria and Eukaryotes). Their structure is characterized by an extensive conjugated double-bond system, which serves as a light-absorbing chromophore, hence determining its colour, and enables carotenoids to absorb energy from other molecules and to act as antioxidant agents. Humans obtain carotenoids mainly via the consumption of fruits and vegetables, and to a smaller extent from other food sources such as fish and eggs. The concentration of carotenoids in the human plasma and tissues has been positively associated with a lower incidence of several chronic diseases including, cancer, diabetes, macular degeneration and cardiovascular conditions, likely due to their antioxidant properties. However, an important aspect of carotenoids, namely β- and α-carotene and β-cryptoxanthin, in human health and development, is their potential to be converted by the body into Vitamin A.
Yet, bioavailability of carotenoids is relatively low (< 30%) and dependent, among others, on dietary factors, such as amount and type of dietary lipids and the presence of dietary fibres. One dietary factor that has been found to negatively impact carotenoid bioaccessibility and cellular uptake in vitro is high concentrations of divalent cations during simulated gastro-intestinal digestion. Nevertheless, the mechanism of action of divalent cations remains unclear. The goal of this thesis was to better understand how divalent cations act during digestion and modulate carotenoid bioavailability. In vitro trials of simulated gastro-intestinal digestion and cellular uptake were run to investigate how varying concentrations of calcium, magnesium and zinc affected the bioaccessibility of both pure carotenoids and carotenoids from food matrices. In order to validate or refute results obtained in vitro, a randomized and double blinded placebo controlled cross-over postprandial trial (24 male participants) was carried out, testing the effect of 3 supplementary calcium doses (0 mg, 500 mg and 1000 mg) on the bioavailability of carotenoids from a spinach based meal. In vitro trials showed that addition of the divalent cations significantly decreased the bioaccessibility of both pure carotenoids (P < 0.001) and those from food matrices (P < 0.01). This effect was dependent on the type of mineral and its concentration. Strongest effects were seen for increasing concentrations of calcium followed by magnesium and zinc. The addition of divalent cations also altered the physico-chemical properties, i.e. viscosity and surface tension, of the digestas. However, the extent of this effect varied according to the type of matrix. The effects on bioaccessibility and physico-chemical properties were accompanied by variations of the zeta-potential of the particles in solution. Taken together, results from the in vitro trials strongly suggested that divalent cations were able to bind bile salts and other surfactant agents, affecting their solubility. The observed i) decrease in macroviscosity, ii) increase in surface tension, and the iii) reduction of the zeta-potential of the digesta, confirmed the removal of surfactant agents from the system, most likely due to precipitation as a result of the lower solubility of the mineral-surfactant complexes. As such, micellarization of carotenoids was hindered, explaining their reduced bioaccessibility. As for the human trial, results showed that there was no significant influence of supplementation with either 500 or 1000 mg of supplemental calcium (in form of carbonate) on the bioavailability of a spinach based meal, as measured by the area-under curve of carotenoid concentrations in the plasma-triacylglycerol rich fraction, suggesting that the in vitro results are not supported in such an in vivo scenario, which may be explained by the initial low bioaccessibility of spinach carotenoids and the dissolution kinetics of the calcium pills. Further investigations are necessary to understand how divalent cations act during in vivo digestion and potentially interact with lipophilic nutrients and food constituents.

Cell migration is essential for embryogenesis, wound healing, immune surveillance, and
progression of diseases, such as cancer metastasis. For the migration to occur, cellular
structures such as actomyosin cables and cell-substrate adhesion clusters must interact.
As cell trajectories exhibit a random character, so must such interactions. Furthermore,
migration often occurs in a crowded environment, where the collision outcome is deter-
mined by altered regulation of the aforementioned structures. In this work, guided by a
few fundamental attributes of cell motility, we construct a minimal stochastic cell migration
model from ground-up. The resulting model couples a deterministic actomyosin contrac-
tility mechanism with stochastic cell-substrate adhesion kinetics, and yields a well-defined
piecewise deterministic process. The signaling pathways regulating the contractility and
adhesion are considered as well. The model is extended to include cell collectives. Numer-
ical simulations of single cell migration reproduce several experimentally observed results,
including anomalous diffusion, tactic migration, and contact guidance. The simulations
of colliding cells explain the observed outcomes in terms of contact induced modification
of contractility and adhesion dynamics. These explained outcomes include modulation
of collision response and group behavior in the presence of an external signal, as well as
invasive and dispersive migration. Moreover, from the single cell model we deduce a pop-
ulation scale formulation for the migration of non-interacting cells. In this formulation,
the relationships concerning actomyosin contractility and adhesion clusters are maintained.
Thus, we construct a multiscale description of cell migration, whereby single, collective,
and population scale formulations are deduced from the relationships on the subcellular
level in a mathematically consistent way.

Der Bevölkerungsrückgang in ländlichen Städten und Dörfern stellt die Gemeinden vor erhebliche Herausforderungen im Bereich der Daseinsvorsorge. So ist die Funktionalität leitungsgebundener Infrastrukturen der Abwasserentsorgung im Zuge einer starken, dispersen demographischen Entdichtung der Siedlungen nur mit betrieblichem Mehraufwand bis hin zu baulichen Systemanpassungen zu gewährleisten. Aktuelle Herausforderungen im Zusammenhang mit dem Klimawandel, wie längere Trockenperioden und immer häufiger und stärker auftretende Niederschlagsereignisse, ein gesteigertes Problembewusstsein zur Endlichkeit kostbarer Ressourcen, wie z.B. Wasser oder Phosphor sowie aktuelle energiepolitische Fragestellungen stellen die zentralisierte Systemkonzeption der kommunalen Abwasserentsorgung in dispersen Siedlungsstrukturen zusätzlich zur Disposition.
Die Bereitstellung, Konzeption, Finanzierung und der Betrieb kommunaler Infrastrukturen ist abhängig von den Bedarfsträgern. Im Zuge weitreichender, dynamischer und motivorientierter Migrationsbewegungen sind gerade ländliche Raumstrukturen von starker Abwanderung, insbesondere jüngerer Kohorten und zusätzlich von Überalterung und hohen Sterbeziffern betroffen. In Abhängigkeit der raumstrukturellen Beschaffenheit einzelner Städte und Dörfer und deren Lage im überörtlichen Sinne, können die Nutzungsmischung, Größe der Siedlungen und ebenso die altersstrukturelle Zusammensetzung der Einwohner sowie die Bevölkerungsdichte erheblich schwanken. Aus der Komposition von Bevölkerung, Raumfunktionen und Infrastrukturen ergeben sich ebenso unterschiedliche demographische Entwicklungsperspektiven, die im Rahmen dieser Arbeit szenariobasiert analysiert werden.
Die auf der de facto-Bevölkerung der ländlichen Modellstädte und -dörfer aufbauenden Demographieszenarien bilden die Basis der weiterführenden Untersuchung der kleinräumigen Auswirkungen auf deren Abwasserentsorgungssysteme. Der Untersuchungsansatz stützt sich auf eine umfassende Daten- und Analysebasis aus dem BMBF-Verbundprojekt SinOptiKom (2016). Die Synthese aus der de facto-Bevölkerung, ihrer Entwicklung durch kohortenspezifisches Migrationsverhalten, ihrer natürlichen Entwicklung sowie der SinOptiKom-Analyseergebnisse, zur Transformation der Abwasserentsorgungssysteme in den Modellgemeinden, bilden die Grundlage für die Ableitung und Diskussion möglicher Transformations- und Konsolidierungsstrategien der Gemeinden.
Den methodischen Schwerpunkt der Untersuchung bildet die szenariobasierte Analyse, mit der sich mögliche zukünftige Entwicklungen im betrachteten Themenfeld sowohl quantitativ als auch graphisch abbilden und durch relevante Akteure der örtlichen, überörtlichen und fachlichen Planung diskutieren lassen, um daraus Handlungsstrategien abzuleiten.

On the Effect of Nanofillers on the Environmental Stress Cracking Resistance of Glassy Polymers
(2019)

It is well known that reinforcing polymers with small amounts of nano-sized fillers is one of the most effective methods for simultaneously improving their mechanical and thermal properties. However, only a small number of studies have focused on environ-mental stress cracking (ESC), which is a major issue for premature failures of plastic products in service. Therefore, the contribution of this work focused on the influence of nano-SiO2 particles on the morphological, optical, mechanical, thermal, as well as envi-ronmental stress cracking properties of amorphous-based nanocomposites.
Polycarbonate (PC), polystyrene (PS) and poly(methyl methacrylate) (PMMA) nanocom-posites containing different amounts and sizes of nano-SiO2 particles were prepared using a twin-screw extruder followed by injection molding. Adding a small amount of nano-SiO2 caused a reduction in optical properties but improved the tensile, toughness, and thermal properties of the polymer nanocomposites. The significant enhancement in mechanical and thermal properties was attributed to the adequate level of dispersion and interfacial interaction of the SiO2 nanoparticles in the polymer matrix. This situation possibly increased the efficiency of stress transfer across the nanocomposite compo-nents. Moreover, the data revealed a clear dependency on the filler size. The polymer nanocomposites filled with smaller nanofillers exhibited an outstanding enhancement in both mechanical properties and transparency compared with nanocomposites filled with larger particles. The best compromise of strength, toughness, and thermal proper-ties was achieved in PC-based nanocomposites. Therefore, special attention to the influ-ence of nanofiller on the ESC resistance was given to PC.
The ESC resistance of the materials was investigated under static loading with and without the presence of stress-cracking agents. Interestingly, the incorporation of nano-SiO2 greatly enhanced the ESC resistance of PC in all investigated fluids. This result was particularly evident with the smaller quantities and sizes of nano-SiO2. The enhancement in ESC resistance was more effective in mild agents and air, where the quality of the deformation process was vastly altered with the presence of nano-SiO2. This finding confirmed that the new structural arrangements on the molecular scale in-duced by nanoparticles dominate over the ESC agent absorption effect and result in greatly improving the ESC resistance of the materials. This effect was more pronounced with increasing molecular weight of PC due to an increase in craze stability and fibril density. The most important and new finding is that the ESC behavior of polymer-based nanocomposites/ stress-cracking agent combinations can be scaled using the Hansen solubility parameter. Thus allowed us to predict the risk of ESC as a function of the filler content for different stress-cracking agents without performing extensive tests. For a comparison of different amorphous polymer-based nanocomposites at a given nano-SiO2 particle content, the ESC resistance of materials improved in the following order: PMMA/SiO2 < PS/SiO2 < low molecular weight PC/SiO2 < high molecular weight PC/SiO2. In most cases, nanocomposites with 1 vol.% of nano-SiO2 particles exhibited the largest improvement in ESC resistance.
However, the remarkable improvement in the ESC resistance—particularly in PC-based nanocomposites—created some challenges related to material characterization because testing times (failure time) significantly increased. Accordingly, the superposition ap-proach has been applied to construct a master curve of crack propagation model from the available short-term tests at different temperatures. Good agreement of the master curves with the experimental data revealed that the superposition approach is a suitable comparative method for predicting slow crack growth behavior, particularly for long-duration cracking tests as in mild agents. This methodology made it possible to mini-mize testing time.
Additionally, modeling and simulations using the finite element method revealed that multi-field modeling could provide reasonable predictions for diffusion processes and their impact on fracture behavior in different stress cracking agents. This finding sug-gests that the implemented model may be a useful tool for quick screening and mitigat-ing the risk of ESC failures in plastic products.

Most modern multiprocessors offer weak memory behavior to improve their performance in terms of throughput. They allow the order of memory operations to be observed differently by each processor. This is opposite to the concept of sequential consistency (SC) which enforces a unique sequential view on all operations for all processors. Because most software has been and still is developed with SC in mind, we face a gap between the expected behavior and the actual behavior on modern architectures. The issues described only affect multithreaded software and therefore most programmers might never face them. However, multi-threaded bare metal software like operating systems, embedded software, and real-time software have to consider memory consistency and ensure that the order of memory operations does not yield unexpected results. This software is more critical as general consumer software in terms of consequences, and therefore new methods are needed to ensure their correct behavior.
In general, a memory system is considered weak if it allows behavior that is not possible in a sequential system. For example, in the SPARC processor with total store ordering (TSO) consistency, all writes might be delayed by store buffers before they eventually are processed by the main memory. This allows the issuing process to work with its own written values before other processes observed them (i.e., reading its own value before it leaves the store buffer). Because this behavior is not possible with sequential consistency, TSO is considered to be weaker than SC. Programming in the context of weak memory architectures requires a proper comprehension of how the model deviates from expected sequential behavior. For verification of these programs formal representations are required that cover the weak behavior in order to utilize formal verification tools.
This thesis explores different verification approaches and respectively fitting representations of a multitude of memory models. In a joint effort, we started with the concept of testing memory operation traces in regard of their consistency with different memory consistency models. A memory operation trace is directly derived from a program trace and consists of a sequence of read and write operations for each process. Analyzing the testing problem, we are able to prove that the problem is NP-complete for most memory models. In that process, a satisfiability (SAT) encoding for given problem instances was developed, that can be used in reachability and robustness analysis.
In order to cover all program executions instead of just a single program trace, additional representations are introduced and explored throughout this thesis. One of the representations introduced is a novel approach to specify a weak memory system using temporal logics. A set of linear temporal logic (LTL) formulas is developed that describes all properties required to restrict possible traces to those consistent to the given memory model. The resulting LTL specifications can directly be used in model checking, e.g., to check safety conditions. Unfortunately, the derived LTL specifications suffer from the state explosion problem: Even small examples, like the Peterson mutual exclusion algorithm, tend to generate huge formulas and require vast amounts of memory for verification. For this reason, it is concluded that using the proposed verification approach these specifications are not well suited for verification of real world software. Nonetheless, they provide comprehensive and formally correct descriptions that might be used elsewhere, e.g., programming or teaching.
Another approach to represent these models are operational semantics. In this thesis, operational semantics of weak memory models are provided in the form of reference machines that are both correct and complete regarding the memory model specification. Operational semantics allow to simulate systems with weak memory models step by step. This provides an elegant way to study the effects that lead to weak consistent behavior, while still providing a basis for formal verification. The operational models are then incorporated in verification tools for multithreaded software. These state space exploration tools proved suitable for verification of multithreaded software in a weak consistent memory environment. However, because not only the memory system but also the processor are expressed as operational semantics, some verification approach will not be feasible due to the large size of the state space.
Finally, to tackle the beforementioned issue, a state transition system for parallel programs is proposed. The transition system is defined by a set of structural operational semantics (SOS) rules and a suitable memory structure that can cover multiple memory models. This allows to influence the state space by use of smart representations and approximation approaches in future work.

Economics of Downside Risk
(2019)

Ever since establishment of portfolio selection theory by Markowitz (1952), the use of Standard deviation as a measure of risk has heavily been criticized. The aim of this thesis is to refine classical portfolio selection and asset pricing theory by using a downside deviation risk measure. It is defined as below-target semideviation and referred to as downside risk.
Downside efficient portfolios maximize expected payoff given a prescribed upper bound for downside risk and, thus, are analogs to mean-variance efficient portfolios in the sense of Markowitz. The present thesis provides an alternative proof of existence of downside efficient portfolios and identifies a sufficient criterion for their uniqueness. A specific representation of their form brings structural similarity to mean-variance efficient portfolios to light. Eventually, a separation theorem for the existence and uniqueness of portfolios that maximize the trade-off between downside risk and return is established.
The notion of a downside risk asset market equilibrium (DRAME) in an asset market with finitely many investors is introduced. This thesis addresses the existence and uniqueness Problem of such equilibria and specifies a DRAME pricing formula. In contrast to prices obtained from the mean-variance CAPM pricing formula, DRAME prices are arbitrage-free and strictly positive.
The final part of this thesis addresses practical issues. An algorithm that allows for an effective computation of downside efficient portfolios from simulated or historical financial data is outlined. In a simulation study, it is revealed in which scenarios downside efficient portfolios
outperform mean-variance efficient portfolios.

The simulation of physical phenomena involving the dynamic behavior of fluids and gases
has numerous applications in various fields of science and engineering. Of particular interest
is the material transport behavior, the tendency of a flow field to displace parts of the
medium. Therefore, many visualization techniques rely on particle trajectories.
Lagrangian Flow Field Representation. In typical Eulerian settings, trajectories are
computed from the simulation output using numerical integration schemes. Accuracy concerns
arise because, due to limitations of storage space and bandwidth, often only a fraction
of the computed simulation time steps are available. Prior work has shown empirically that
a Lagrangian, trajectory-based representation can improve accuracy [Agr+14]. Determining
the parameters of such a representation in advance is difficult; a relationship between the
temporal and spatial resolution and the accuracy of resulting trajectories needs to be established.
We provide an error measure for upper bounds of the error of individual trajectories.
We show how areas at risk for high errors can be identified, thereby making it possible to
prioritize areas in time and space to allocate scarce storage resources.
Comparative Visual Analysis of Flow Field Ensembles. Independent of the representation,
errors of the simulation itself are often caused by inaccurate initial conditions,
limitations of the chosen simulation model, and numerical errors. To gain a better understanding
of the possible outcomes, multiple simulation runs can be calculated, resulting in
sets of simulation output referred to as ensembles. Of particular interest when studying the
material transport behavior of ensembles is the identification of areas where the simulation
runs agree or disagree. We introduce and evaluate an interactive method that enables application
scientists to reliably identify and examine regions of agreement and disagreement,
while taking into account the local transport behavior within individual simulation runs.
Particle-Based Representation and Visualization of Uncertain Flow Data Sets. Unlike
simulation ensembles, where uncertainty of the solution appears in the form of different
simulation runs, moment-based Eulerian multi-phase fluid simulations are probabilistic in
nature. These simulations, used in process engineering to simulate the behavior of bubbles in
liquid media, are aimed toward reducing the need for real-world experiments. The locations
of individual bubbles are not modeled explicitly, but stochastically through the properties of
locally defined bubble populations. Comparisons between simulation results and physical
experiments are difficult. We describe and analyze an approach that generates representative
sets of bubbles for moment-based simulation data. Using our approach, application scientists
can directly, visually compare simulation results and physical experiments.

The usage of sensors in modern technical systems and consumer products is in a rapid increase. This advancement can be characterized by two major factors, namely, the mass introduction of consumer oriented sensing devices to the market and the sheer amount of sensor data being generated. These characteristics raise subsequent challenges regarding both the consumer sensing devices' reliability and the management and utilization of the generated sensor data. This thesis addresses these challenges through two main contributions. It presents a novel framework that leverages sentiment analysis techniques in order to assess the quality of consumer sensing devices. It also couples semantic technologies with big data technologies to present a new optimized approach for realization and management of semantic sensor data, hence providing a robust means of integration, analysis, and reuse of the generated data. The thesis also presents several applications that show the potential of the contributions in real-life scenarios.
Due to the broad range, growing feature set and fast release pace of new sensor-based products, evaluating these products is very challenging as standard product testing is not practical. As an alternative, an end-to-end aspect-based sentiment summarizer pipeline for evaluation of consumer sensing devices is presented. The pipeline uses product reviews to extract the sentiment at the aspect level and includes several components namely, product name extractor, aspects extractor and a lexicon-based sentiment extractor which handles multiple sentiment analysis challenges such as sentiment shifters, negations, and comparative sentences among others. The proposed summarizer's components generally outperform the state-of-the-art approaches. As a use case, features of the market leading fitness trackers are evaluated and a dynamic visual summarizer is presented to display the evaluation results and to provide personalized product recommendations for potential customers.
The increased usage of sensing devices in the consumer market is accompanied with increased deployment of sensors in various other fields such as industry, agriculture, and energy production systems. This necessitates using efficient and scalable methods for storing and processing of sensor data. Coupling big data technologies with semantic techniques not only helps to achieve the desired storage and processing goals, but also facilitates data integration, data analysis, and the utilization of data in unforeseen future applications through preserving the data generation context. This thesis proposes an efficient and scalable solution for semantification, storage and processing of raw sensor data through ontological modelling of sensor data and a novel encoding scheme that harnesses the split between the statements of the conceptual model of an ontology (TBox) and the individual facts (ABox) along with in-memory processing capabilities of modern big data systems. A sample use case is further introduced where a smartphone is deployed in a transportation bus to collect various sensor data which is then utilized in detecting street anomalies.
In addition to the aforementioned contributions, and to highlight the potential use cases of sensor data publicly available, a recommender system is developed using running route data, used for proximity-based retrieval, to provide personalized suggestions for new routes considering the runner's performance, visual and nature of route preferences.
This thesis aims at enhancing the integration of sensing devices in daily life applications through facilitating the public acquisition of consumer sensing devices. It also aims at achieving better integration and processing of sensor data in order to enable new potential usage scenarios of the raw generated data.

Alkyl methoxypyrazines (MPs) have been identified in foodstuffs of plant origin as potent flavor compounds, contributing significantly to the characteristic vegetative, so-called green sensory impression of products made thereof. Of particular interest are 2-isopropyl-3-methoxypyrazin (IPMP), 2-methoxy-3-sec-butylpyrazin (SBMP) and 2-isobutyl-3-methoxypyrazin (IBMP) as they are often dominating in flavor due to their low odor thresholds. Biogenesis of MPs takes place in various species, resulting in variing concentration levels and distributions (ppt levels in Vitis vinifera wine berries, ppb levels in vegetables). The before mentioned and further MPs are also found in body fluids of insects such as ladybugs, e. g. in the species Coccinella septempunctata and Harmonia axyridis. Ladybugs may play a role in the generation of off-flavors in wine in case of their incorporation during harvest and wine making. Furthermore, MPs are products from the metabolism of certain microorganisms and could lead to off-flavors indirectly via contact materials like cork stoppers for wine.
The last step in the proposed biosynthetic pathway(s) was clarified als O-methylation of alykl hydroxypyrazines, whereas the initial steps considering naturally occurring amino acids as starting materials are not yet fully explored. In case of SBMP, the alkyl side chain may thus derive from L-isoleucine, resulting in the same, namely (S)-configuration of the stereo center in SBMP.
Considering analytical approaches, MPs in high concentration levels as in vegetables are accessible using classical extraction techniques, simple separation and detection techniques. On the other hand, for lower concentration ranges near the odor thresholds of MPs in wine and for the highly complex matrix of wine most analytical methods do not yield the necessary levels of detections.
In this work a trace-level method for routine analysis and quantitation of MPs in the concentration range of the odor thresholds in white wine of 1 to 2 ng/L was developed. The extraction of the analytes was based on automated headspace solid phase micro extraction (HS-SPME). The separation was done either by heart-cut multidimensional GC (H/C MDGC) or comprehensive two-dimensional GC (GCxGC). MPs were detected using mass spectrometry (MS) in the selected ion monitoring (SIM) mode, especially for higher concentrations. To better clarify co-elution situations and for lower MP concentrations, tandem MS (MS/MS) was used in the selected reaction monitoring (SRM) mode. For a more reliable quatitation of trace levels, the stable isotope dilution assay (SIDA) was applied. The optimized method using HS-SPME H/C MDGC-MS/MS had levels of detection at concentrations below the odor thresholds of MPs in wine and allowed for the analysis of further MPs (isomers of dimethyl methoxypyrazine). As the core piece of enantiodifferentiation, one of the analytical columns in MDGC or GCxGC was replaced by a column with chiral selectors on the stationary phase, enabling the evaluation of the enantiomeric composition of SBMP in various samples.
The quantitation of MPs in vegetable samples in this work revealed levels in the range of a few ng/kg up to µg/kg, which is in accordance with results from literature. Quantitative studies of wine (Sauvignon blanc and Cabernet blanc) indicated influences of oenological and viticultural processes on MP levels. The evaluation of the enantiomeric composition of SBMP resulted in the exclusive detection of (S)-SBMP in all analyzed samples, various vegetables, wine and ladybug species. The congruency of the configuration of the stereo center in the side chain of (S)-SBMP and the side chain of L-Isoleucin supports the hypothesis that natural amino acids serve as starting material in the biosynthesis of MPs. Extending the optimized H/C MDGC method, a successful separation of the isomers 3-methoxy-2,5-dimethylpyrazin (DMMP) and 2-methoxy-3,5-dimethylpyrazin (MDMP) was achieved. Of these isomers only MDMP was detected in cork and wine with an atypical cork off-flavor and it was identified for the first time in two ladybug species, Harmonia axyridis and Coccinella septempunctata.
The methods developed in this work allowed for the quantitation of MPs in the range of a few ng/L. This can be used for further studies on influences on endogenic MP levels in Vitis vinifera or on influences on MP levels in wine by oenological processes or by contamination from different sources. For further clarification on the biogenesis of MPs, studies using labeled precursors or intermediates have to be developed. For the analysis of the resulting compounds from these fundamental studies, the quantitative (and enantioselective) analytical methods described here are essential.

The systems in industrial automation management (IAM) are information systems. The management parts of such systems are software components that support the manufacturing processes. The operational parts control highly plug-compatible devices, such as controllers, sensors and motors. Process variability and topology variability are the two main characteristics of software families in this domain. Furthermore, three roles of stakeholders -- requirement engineers, hardware-oriented engineers, and software developers -- participate in different derivation stages and have different variability concerns. In current practice, the development and reuse of such systems is costly and time-consuming, due to the complexity of topology and process variability. To overcome these challenges, the goal of this thesis is to develop an approach to improve the software product derivation process for systems in industrial automation management, where different variability types are concerned in different derivation stages. Current state-of-the-art approaches commonly use general-purpose variability modeling languages to represent variability, which is not sufficient for IAM systems. The process and topology variability requires more user-centered modeling and representation. The insufficiency of variability modeling leads to low efficiency during the staged derivation process involving different stakeholders. Up to now, product line approaches for systematic variability modeling and realization have not been well established for such complex domains. The model-based derivation approach presented in this thesis integrates feature modeling with domain-specific models for expressing processes and topology. The multi-variability modeling framework includes the meta-models of the three variability types and their associations. The realization and implementation of the multi-variability involves the mapping and the tracing of variants to their corresponding software product line assets. Based on the foundation of multi-variability modeling and realization, a derivation infrastructure is developed, which enables a semi-automated software derivation approach. It supports the configuration of different variability types to be integrated into the staged derivation process of the involved stakeholders. The derivation approach is evaluated in an industry-grade case study of a complex software system. The feasibility is demonstrated by applying the approach in the case study. By using the approach, both the size of the reusable core assets and the automation level of derivation are significantly improved. Furthermore, semi-structured interviews with engineers in practice have evaluated the usefulness and ease-of-use of the proposed approach. The results show a positive attitude towards applying the approach in practice, and high potential to generalize it to other related domains.

Novel image processing techniques have been in development for decades, but most
of these techniques are barely used in real world applications. This results in a gap
between image processing research and real-world applications; this thesis aims to
close this gap. In an initial study, the quantification, propagation, and communication
of uncertainty were determined to be key features in gaining acceptance for
new image processing techniques in applications.
This thesis presents a holistic approach based on a novel image processing pipeline,
capable of quantifying, propagating, and communicating image uncertainty. This
work provides an improved image data transformation paradigm, extending image
data using a flexible, high-dimensional uncertainty model. Based on this, a completely
redesigned image processing pipeline is presented. In this pipeline, each
step respects and preserves the underlying image uncertainty, allowing image uncertainty
quantification, image pre-processing, image segmentation, and geometry
extraction. This is communicated by utilizing meaningful visualization methodologies
throughout each computational step.
The presented methods are examined qualitatively by comparing to the Stateof-
the-Art, in addition to user evaluation in different domains. To show the applicability
of the presented approach to real world scenarios, this thesis demonstrates
domain-specific problems and the successful implementation of the presented techniques
in these domains.