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The biodiversity of the cyanobacterial lichen flora of Vietnam is chronically understudied. Previous studies often neglected the lichens that inhabit lowlands especially outcrops and sand dunes that are common habitats in Vietnam.
A cyanolichen collection was gathered from lowlands of central and southern Vietnam to study their diversity and distribution. At the same time, cultured photobionts from those lichens were used for olyphasic taxonomic approach.
A total of 66 cyanolichens were recorded from lowland regions in central and southern of Vietnam, doubles the number of cyanolichens for Vietnam. 80% of them are new records for Vietnam in which a new species Pyrenopsis melanophthalma and two new unidentified lichinacean taxa were described.
A notably floristic segregation by habitats was indicated in the communities. Saxicolous Lichinales dominated in coastal outcrops that corresponded to 56% of lichen species richness. Lecanoralean cyanolichens and basidiolichens were found in the lowland forests. Precipitation correlated negatively to species richness in this study, indicating a competitive relationship.
Eleven cyanobacterial strains including 8 baeocyte-forming members of the genus Chroococcidiopsis and 3 heterocyte-forming species of the genera Nostoc and Scytonema were successfully isolated from lichens.
Phylogenetic and morphological analyses indicated that Chroococcidiopsis was the unique photobiont in Peltula. New mophological characters were found in two Chroococcidiopsis strains: (1) the purple content of cells in one photobiont strain that was isolated from a new lichinacean taxon, and (2) the pseudofilamentous feature by binary division from a strain that was isolated from Porocyphus dimorphus.
With respect to heterocyte-forming cyanobiont, Scytonema was confirmed as the photobiont in the ascolichen Heppia lutosa applying the polyphasic method. The genus Scytonema in the basidiolichens Cyphellostereum was morphologically examinated in lichen thalli. For the first time the intracellular haustorial system of basidiolichen genus Cyphellostereum was noted and investigated.
Phylogenetic analysis of photobiont strains Nostoc from Pannaria tavaresii and Parmeliella brisbanensis indicated that a high selectivity occurred in Parmeliella brisbanensis that were from different regions of the world, while low photobiont selectivity occurred among Pannaria tavaresii samples from different geographical regions.
The herewith presented dissertation is therefore an important contribution to the lichen flora of Vietnam and a significant improvement of the actual knowledge about cyanolichens in this country.
Human forest modification is among the largest global drivers of terrestrial degradation
of biodiversity, species interactions, and ecosystem functioning. One of the most
pertinent components, forest fragmentation, has a long history in ecological research
across the globe, particularly in lower latitudes. However, we still know little how
fragmentation shapes temperate ecosystems, irrespective of the ancient status quo of
European deforestation. Furthermore, its interaction with another pivotal component
of European forests, silvicultural management, are practically unexplored. Hence,
answering the question how anthropogenic modification of temperate forests affects
fundamental components of forest ecosystems is essential basic research that has
been neglected thus far. Most basal ecosystem elements are plants and their insect
herbivores, as they form the energetic basis of the tropic pyramid. Furthermore, their
respective biodiversity, functional traits, and the networks of interactions they
establish are key for a multitude of ecosystem functions, not least ecosystem stability.
Hence, the thesis at hand aimed to disentangle this complex system of
interdependencies of human impacts, biodiversity, species traits and inter-species
interactions.
The first step lay in understanding how woody plant assemblages are shaped by
human forest modification. For this purpose, field investigations in 57 plots in the
hyperfragmented cultural landscape of the Northern Palatinate highlands (SW
Germany) were conducted, censusing > 4,000 tree/shrub individuals from 34 species.
Use of novel, integrative indices for different types of land-use allowed an accurate
quantification of biotic responses. Intriguingly, woody tree/shrub communities reacted
strikingly positive to forest fragmentation, with increases in alpha and beta diversity,
as well as proliferation of heat/drought/light adapted pioneer species. Contrarily,
managed interior forests were homogenized/constrained in biodiversity, with
dominance of shade/cold adapted commercial tree species. Comparisons with recently
unmanaged stands (> 40 a) revealed first indications for nascent conversion to oldgrowth
conditions, with larger variability in light conditions and subsequent
community composition. Reactions to microclimatic conditions, the relationship
between associated species traits and the corresponding species pool, as well as
facilitative/constraining effects by foresters were discussed as underlying mechanisms.
Reactions of herbivore assemblages to forest fragmentation and the subsequent
changes in host plant communities were assessed by comprehensive sampling of >
1,000 live herbivores from 134 species in the forest understory. Diversity was –
similarly to plant communities - higher in fragmentation affected habitats, particularly
in edges of continuous control forests. Furthermore, average trophic specialization
showed an identical pattern. Mechanistically, benefits from microclimatic conditions,
host availability, as well as pronounced niche differentiation are deemed responsible.
While communities were heterogeneous, with no segregation across habitats, (smallforest fragments, edges, and interior of control forests), vegetation diversity, herbivore
diversity, as well as trophic specialization were identified to shape community
composition. This probably reflected a gradient from generalistic/species poor vs.
specialist/species rich herbivore assemblages.
Insect studies conducted in forest systems are doomed to incompleteness
without considering ‘the last biological frontier’, the tree canopies. To access their
biodiversity, relationship to edge effects, and their conservational value, the
arboricolous arthropod fauna of 24 beech (Fagus sylvatica) canopies was sampled via
insecticidal knockdown (‘fogging’). This resulted in an exhaustive collection of > 46,000
specimens from 24 major taxonomic/functional groups. Abundance distributions were
markedly negative exponential, indicating high abundance variability in tree crowns.
Individuals of six pertinent orders were identified to species level, returning > 3,100
individuals from 175 species and 52 families. This high diversity did marginally differ
across habitats, with slightly higher species richness in edge canopies. However,
communities in edge crowns were noticeably more heterogeneous than those in the
forest interior, possibly due to higher variability in environmental edge conditions. In
total, 49 species with protective value were identified, of which only one showed
habitat preferences (for near-natural interior forests). Among them, six species (all
beetles, Coleoptera) were classified as ‘priority species’ for conservation efforts. Hence,
beech canopies of the Northern Palatinate highlands can be considered strongholds of
insect biodiversity, incorporating many species of particular protective value.
The intricacy of plant-herbivore interaction networks and their relationship to
forest fragmentation is largely unexplored, particularly in Central Europe. Illumination
of this matter is all the more important, as ecological networks are highly relevant for
ecosystem stability, particularly in the face of additional anthropogenic disturbances,
such as climate change. Hence, plant-herbivore interaction networks (PHNs) were
constructed from woody plants and their associated herbivores, sampled alive in the
understory. Herbivory verification was achieved using no-choice-feeding assays, as well
as literature references. In total, networks across small forest fragments, edges, and
the forest interior consisted of 696 interactions. Network complexity and trophic niche
redundancy were compared across habitats using a rarefaction-like resampling
procedure. PHNs in fragmentation affected forest habitats were significantly more
complex, as well as more redundant in their realized niches, despite being composed of
relatively more specialist species. Furthermore, network robustness to climate change
was quantified utilizing four different scenarios for climate change susceptibility of
involved plants. In this procedure, remaining herbivores in the network were measured
upon successive loss of their host plant species. Consistently, PHNs in edges (and to a
smaller degree in small fragments) withstood primary extinction of plant species
longer, making them more robust. This was attributed to the high prevalence of
heat/drought-adapted species, as well as to beneficial effects of network topography
(complexity and redundancy). Consequently, strong correlative relationships were
found between realized niche redundancy and climate change robustness of PHNs.
This was both the first time that biologically realistic extinctions (instead of e.g.random extinctions) were used to measure network robustness, and that topographical
network parameters were identified as potential indicators for network robustness
against climate change.
In synthesis, in the light of global biotic degradation due to human forest
modification, the necessity to differentiate must be claimed. Ecosystems react
differently to anthropogenic disturbances, and it seems the particular features present
in Central European forests (ancient deforestation, extensive management, and, most
importantly, high richness in open-forest plant species) cause partly opposed patterns
to other biomes. Lenient microclimates and diverse plant communities facilitate
equally diverse herbivore assemblages, and hence complex and robust networks,
opposed to the forest interior. Therefore, in the reality of extensively used cultural
landscapes, fragmentation affected forest ecosystems, particularly forest edges, can be
perceived as reservoir for biodiversity, and ecosystem functionality. Nevertheless, as
practically all forest habitats considered in this thesis are under human cultivation,
recommendations for ecological enhancement of all forest habitats are discussed.
Cells and organelles are enclosed by membranes that consist of a lipid bilayer harboring highly
diverse membrane proteins (MPs). These carry out vital functions, and α-helical MPs, in
particular, are of outstanding pharmacological importance, as they comprise more than half of
all drug targets. However, knowledge from MP research is limited, as MPs require membranemimetic
environments to retain their native structures and functions and, thus, are not readily
amenable to in vitro studies. To gain insight into vectorial functions, as in the case of channels
and transporters, and into topology, which describes MP conformation and orientation in the
context of a membrane, purified MPs need to be reconstituted, that is, transferred from detergent
micelles into a lipid-bilayer system.
The ultimate goal of this thesis was to elucidate the membrane topology of Mistic, which is
an essential regulator of biofilm formation in Bacillus subtilis consisting of four α-helices. The
conformational stability of Mistic has been shown to depend on the presence of a hydrophobic
environment. However, Mistic is characterized by an uncommonly hydrophilic surface, and
its helices are significantly shorter than transmembrane helices of canonical integral MPs.
Therefore, the means by which its association with the hydrophobic interior of a lipid bilayer
is accomplished is a subject of much debate. To tackle this issue, Mistic was produced and
purified, reconstituted, and subjected to topological studies.
Reconstitution of Mistic in the presence of lipids was performed by lowering the detergent
concentration to subsolubilizing concentrations via addition of cyclodextrin. To fully exploit
the advantages offered by cyclodextrin-mediated detergent removal, a quantitative model was
established that describes the supramolecular state of the reconstitution mixture and allows
for the prediction of reconstitution trajectories and their cross points with phase boundaries.
Automated titrations enabled spectroscopic monitoring of Mistic reconstitutions in real time.
On the basis of the established reconstitution protocol, the membrane topology of Mistic was
investigated with the aid of fluorescence quenching experiments and oriented circular dichroism
spectroscopy. The results of these experiments reveal that Mistic appears to be an exception
from the commonly observed transmembrane orientation of α-helical MPs, since it exhibits
a highly unusual in-plane topology, which goes in line with recent coarse-grained molecular
dynamics simulations.
Membrane proteins are generally soluble only in the presence of detergent micelles or other membrane-mimetic systems, which renders the determination of the protein’s molar mass or oligomeric state difficult. Moreover, the amount of bound detergent varies drastically among different proteins and detergents. However, the type of detergent and its concentration have a great influence on the protein’s structure, stability, and functionality and the success of structural and functional investigations and crystallographic trials. Size-exclusion chromatography, which is commonly used to determine the molar mass of water-soluble proteins, is not suitable for detergent-solubilised proteins because
the protein–detergent complex has a different conformation and, thus, commonly exhibits
a different migration behaviour than globular standard proteins. Thus, calibration curves obtained with standard proteins are not useful for membrane-protein analysis. However,
the combination of size-exclusion chromatography with ultraviolet absorbance, static light scattering, and refractive index detection provides a tool to determine the molar mass of protein–detergent complexes in an absolute manner and allows for distinguishing the contributions of detergent and protein to the complex.
The goal of this thesis was to refine the standard triple-detection size-exclusion chromatography measurement and data analysis procedure for challenging membrane-protein samples, non-standard detergents, and difficult solvents such as concentrated denaturant solutions that were thought to elude routine approaches. To this end, the influence of urea on the performance of the method beyond direct influences on detergents and proteins was investigated with the help of the water-soluble bovine serum albumin. On the basis of
the obtained results, measurement and data analysis procedures were refined for different detergents and protein–detergent complexes comprising the membrane proteins OmpLA and Mistic from Escherichia coli and Bacillus subtilis, respectively.
The investigations on mass and shape of different detergent micelles and the compositions of protein–detergent complexes in aqueous buffer and concentrated urea solutions
showed that triple-detection size-exclusion chromatography provides valuable information
about micelle masses and shapes under various conditions. Moreover, it is perfectly suited for the straightforward analysis of detergent-suspended proteins in terms of composition and oligomeric state not only under native but, more importantly, also under denaturing conditions.