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Synapses play a central role in the information propagation in the nervous system. A better understanding of synaptic structures and processes is vital for advancing nervous disease research. This work is part of an interdisciplinary project that aims at the quantitative examination of components of the neuromuscular junction, a synaptic connection between a neuron and a muscle cell.
The research project is based on image stacks picturing neuromuscular junctions captured by modern electron microscopes, which permit the rapid acquisition of huge amounts of image data at a high level of detail. The large amount and sheer size of such microscopic data makes a direct visual examination infeasible, though.
This thesis presents novel problem-oriented interactive visualization techniques that support the segmentation and examination of neuromuscular junctions.
First, I introduce a structured data model for segmented surfaces of neuromuscular junctions to enable the computational analysis of their properties. However, surface segmentation of neuromuscular junctions is a very challenging task due to the extremely intricate character of the objects of interest. Hence, such problematic segmentations are often performed manually by non-experts and thus requires further inspection.
With NeuroMap, I develop a novel framework to support proofreading and correction of three-dimensional surface segmentations. To provide a clear overview and to ease navigation within the data, I propose the surface map, an abstracted two-dimensional representation using key features of the surface as landmarks. These visualizations are augmented with information about automated segmentation error estimates. The framework provides intuitive and interactive data correction mechanisms, which in turn permit the expeditious creation of high-quality segmentations.
While analyzing such segmented synapse data, the formulation of specific research questions is often impossible due to missing insight into the data. I address this problem by designing a generic parameter space for segmented structures from biological image data. Furthermore, I introduce a graphical interface to aid its exploration, combining both parameter selection as well as data representation.