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The biodiversity of the cyanobacterial lichen flora of Vietnam is chronically understudied. Previous studies often neglected the lichens that inhabit lowlands especially outcrops and sand dunes that are common habitats in Vietnam.
A cyanolichen collection was gathered from lowlands of central and southern Vietnam to study their diversity and distribution. At the same time, cultured photobionts from those lichens were used for olyphasic taxonomic approach.
A total of 66 cyanolichens were recorded from lowland regions in central and southern of Vietnam, doubles the number of cyanolichens for Vietnam. 80% of them are new records for Vietnam in which a new species Pyrenopsis melanophthalma and two new unidentified lichinacean taxa were described.
A notably floristic segregation by habitats was indicated in the communities. Saxicolous Lichinales dominated in coastal outcrops that corresponded to 56% of lichen species richness. Lecanoralean cyanolichens and basidiolichens were found in the lowland forests. Precipitation correlated negatively to species richness in this study, indicating a competitive relationship.
Eleven cyanobacterial strains including 8 baeocyte-forming members of the genus Chroococcidiopsis and 3 heterocyte-forming species of the genera Nostoc and Scytonema were successfully isolated from lichens.
Phylogenetic and morphological analyses indicated that Chroococcidiopsis was the unique photobiont in Peltula. New mophological characters were found in two Chroococcidiopsis strains: (1) the purple content of cells in one photobiont strain that was isolated from a new lichinacean taxon, and (2) the pseudofilamentous feature by binary division from a strain that was isolated from Porocyphus dimorphus.
With respect to heterocyte-forming cyanobiont, Scytonema was confirmed as the photobiont in the ascolichen Heppia lutosa applying the polyphasic method. The genus Scytonema in the basidiolichens Cyphellostereum was morphologically examinated in lichen thalli. For the first time the intracellular haustorial system of basidiolichen genus Cyphellostereum was noted and investigated.
Phylogenetic analysis of photobiont strains Nostoc from Pannaria tavaresii and Parmeliella brisbanensis indicated that a high selectivity occurred in Parmeliella brisbanensis that were from different regions of the world, while low photobiont selectivity occurred among Pannaria tavaresii samples from different geographical regions.
The herewith presented dissertation is therefore an important contribution to the lichen flora of Vietnam and a significant improvement of the actual knowledge about cyanolichens in this country.
The energy efficiency of today’s microcontrollers is supported by the extensive usage of low-power mechanisms. A full power-down requires in many cases a complex, and maybe error prone, administration scheme, because data from the volatile memory have to be stored in a flash based back- up memory. New types of non-volatile memory, e.g. in RRAM technology, are faster and consumes a fraction of the energy compared to flash technology. This paper evaluates power gating for WSN with RRAM as back-up memory.
A counter-based read circuit tolerant to process variation for low-voltage operating STT-MRAM
(2016)
The capacity of embedded memory on LSIs has kept increasing. It is important to reduce the leakage power of embedded memory for low-power LSIs. In fact, the ITRS predicts that the leakage power in embedded memory will account for 40% of all power consumption by 2024 [1]. A spin transfer torque magneto-resistance random access memory (STT-MRAM) is promising for use as non-volatile memory to reduce the leakage power. It is useful because it can function at low voltages and has a lifetime of over 1016 write cycles [2]. In addition, the STT-MRAM technology has a smaller bit cell than an SRAM. Making the STT-MRAM is suitable for use in high-density products [3–7]. The STT-MRAM uses magnetic tunnel junction (MTJ). The MTJ has two states: a parallel state and an anti-parallel state. These states mean that the magnetization direction of the MTJ’s layers are the same or different. The directions pair determines the MTJ’s magneto- resistance value. The states of MTJ can be changed by the current flowing. The MTJ resistance becomes low in the parallel state and high in the anti-parallel state. The MTJ potentially operates at less than 0.4 V [8]. In other hands, it is difficult to design peripheral circuitry for an STT-MRAM array at such a low voltage. In this paper, we propose a counter-based read circuit that functions at 0.4 V, which is tolerant of process variation and temperature fluctuation.
The task of printed Optical Character Recognition (OCR), though considered ``solved'' by many, still poses several challenges. The complex grapheme structure of many scripts, such as Devanagari and Urdu Nastaleeq, greatly lowers the performance of state-of-the-art OCR systems.
Moreover, the digitization of historical and multilingual documents still require much probing. Lack of benchmark datasets further complicates the development of reliable OCR systems. This thesis aims to find the answers to some of these challenges using contemporary machine learning technologies. Specifically, the Long Short-Term Memory (LSTM) networks, have been employed to OCR modern as well historical monolingual documents. The excellent OCR results obtained on these have led us to extend their application for multilingual documents.
The first major contribution of this thesis is to demonstrate the usability of LSTM networks for monolingual documents. The LSTM networks yield very good OCR results on various modern and historical scripts, without using sophisticated features and post-processing techniques. The set of modern scripts include modern English, Urdu Nastaleeq and Devanagari. To address the challenge of OCR of historical documents, this thesis focuses on Old German Fraktur script, medieval Latin script of the 15th century, and Polytonic Greek script. LSTM-based systems outperform the contemporary OCR systems on all of these scripts. To cater for the lack of ground-truth data, this thesis proposes a new methodology, combining segmentation-based and segmentation-free OCR approaches, to OCR scripts for which no transcribed training data is available.
Another major contribution of this thesis is the development of a novel multilingual OCR system. A unified framework for dealing with different types of multilingual documents has been proposed. The core motivation behind this generalized framework is the human reading ability to process multilingual documents, where no script identification takes place.
In this design, the LSTM networks recognize multiple scripts simultaneously without the need to identify different scripts. The first step in building this framework is the realization of a language-independent OCR system which recognizes multilingual text in a single step. This language-independent approach is then extended to script-independent OCR that can recognize multiscript documents using a single OCR model. The proposed generalized approach yields low error rate (1.2%) on a test corpus of English-Greek bilingual documents.
In summary, this thesis aims to extend the research in document recognition, from modern Latin scripts to Old Latin, to Greek and to other ``under-privilaged'' scripts such as Devanagari and Urdu Nastaleeq.
It also attempts to add a different perspective in dealing with multilingual documents.
Interconnected, autonomously driving cars shall realize the vision of a zero-accident, low energy mobility in spite of a fast increasing traffic volume. Tightly interconnected medical devices and health care systems shall ensure the health of an aging society. And interconnected virtual power plants based on renewable energy sources shall ensure a clean energy supply in a society that consumes more energy than ever before. Such open systems of systems will play an essential role for economy and society.
Open systems of systems dynamically connect to each other in order to collectively provide a superordinate functionality, which could not be provided by a single system alone. The structure as well as the behavior of an open system of system dynamically emerge at runtime leading to very flexible solutions working under various different environmental conditions. This flexibility and adaptivity of systems of systems are a key for realizing the above mentioned scenarios.
On the other hand, however, this leads to uncertainties since the emerging structure and behavior of a system of system can hardly be anticipated at design time. This impedes the indispensable safety assessment of such systems in safety-critical application domains. Existing safety assurance approaches presume that a system is completely specified and configured prior to a safety assessment. Therefore, they cannot be applied to open systems of systems. In consequence, safety assurance of open systems of systems could easily become a bottleneck impeding or even preventing the success of this promising new generation of embedded systems.
For this reason, this thesis introduces an approach for the safety assurance of open systems of systems. To this end, we shift parts of the safety assurance lifecycle into runtime in order to dynamically assess the safety of the emerging system of system. We use so-called safety models at runtime for enabling systems to assess the safety of an emerging system of system themselves. This leads to a very flexible runtime safety assurance framework.
To this end, this thesis describes the fundamental knowledge on safety assurance and model-driven development, which are the indispensable prerequisites for defining safety models at runtime. Based on these fundamentals, we illustrate how we modularized and formalized conventional safety assurance techniques using model-based representations and analyses. Finally, we explain how we advanced these design time safety models to safety models that can be used by the systems themselves at runtime and how we use these safety models at runtime to create an efficient and flexible runtime safety assurance framework for open systems of systems.
The recently established technologies in the areas of distributed measurement and intelligent
information processing systems, e.g., Cyber Physical Systems (CPS), Ambient
Intelligence/Ambient Assisted Living systems (AmI/AAL), the Internet of Things
(IoT), and Industry 4.0 have increased the demand for the development of intelligent
integrated multi-sensory systems as to serve rapid growing markets [1, 2]. These increase
the significance of complex measurement systems, that incorporate numerous advanced
methodological implementations including electronics circuit, signal processing,
and multi-sensory information fusion. In particular, in multi-sensory cognition applications,
to design such systems, the skill-required tasks, e.g., method selection, parameterization,
model analysis, and processing chain construction are elaborated with immense
effort, which conventionally are done manually by the expert designer. Moreover, the
strong technological competition imposes even more complicated design problems with
multiple constraints, e.g., cost, speed, power consumption,
exibility, and reliability.
Thus, the conventional human expert based design approach may not be able to cope
with the increasing demand in numbers, complexity, and diversity. To alleviate the issue,
the design automation approach has been the topic for numerous research works [3-14]
and has been commercialized to several products [15-18]. Additionally, the dynamic
adaptation of intelligent multi-sensor systems is the potential solution for developing
dependable and robust systems. Intrinsic evolution approach and self-x properties [19],
which include self-monitoring, -calibrating/trimming, and -healing/repairing, are among
the best candidates for the issue. Motivated from the ongoing research trends and based
on the background of our research work [12, 13] among the pioneers in this topic, the
research work of the thesis contributes to the design automation of intelligent integrated
multi-sensor systems.
In this research work, the Design Automation for Intelligent COgnitive system with self-
X properties, the DAICOX, architecture is presented with the aim of tackling the design
effort and to providing high quality and robust solutions for multi-sensor intelligent
systems. Therefore, the DAICOX architecture is conceived with the defined goals as
listed below.
Perform front to back complete processing chain design with automated method
selection and parameterization,
Provide a rich choice of pattern recognition methods to the design method pool,
Associate design information via interactive user interface and visualization along
with intuitive visual programming,
Deliver high quality solutions outperforming conventional approaches by using
multi-objective optimization,
Gain the adaptability, reliability and robustness of designed solutions with self-x
properties,
Derived from the goals, several scientific methodological developments and implementations,
particularly in the areas of pattern recognition and computational intelligence,
will be pursued as part of the DAICOX architecture in the research work of this thesis.
The method pool is aimed to contain a rich choice of methods and algorithms covering
data acquisition and sensor configuration, signal processing and feature computation,
dimensionality reduction, and classification. These methods will be selected and parameterized
automatically by the DAICOX design optimization to construct a multi-sensory
cognition processing chain. A collection of non-parametric feature quality assessment
functions for the purpose of Dimensionality Reduction (DR) process will be presented.
In addition, to standard DR methods, the variations of feature selection method, in
particular, feature weighting will be proposed. Three different classification categories
shall be incorporated in the method pool. Hierarchical classification approach will be
proposed and developed to serve as a multi-sensor fusion architecture at the decision
level. Beside multi-class classification, one-class classification methods, e.g., One-Class
SVM and NOVCLASS will be presented to extend functionality of the solutions, in particular,
anomaly and novelty detection. DAICOX is conceived to effectively handle the
problem of method selection and parameter setting for a particular application yielding
high performance solutions. The processing chain construction tasks will be carried
out by meta-heuristic optimization methods, e.g., Genetic Algorithms (GA) and Particle
Swarm Optimization (PSO), with multi-objective optimization approach and model
analysis for robust solutions. In addition, to the automated system design mechanisms,
DAICOX will facilitate the design tasks with intuitive visual programming and various
options of visualization. Design database concept of DAICOX is aimed to allow the
reusability and extensibility of the designed solutions gained from previous knowledge.
Thus, the cooperative design of machine and knowledge from the design expert can also
be utilized for obtaining fully enhanced solutions. In particular, the integration of self-x
properties as well as intrinsic optimization into the system is proposed to gain enduring
reliability and robustness. Hence, DAICOX will allow the inclusion of dynamically
reconfigurable hardware instances to the designed solutions in order to realize intrinsic
optimization and self-x properties.
As a result from the research work in this thesis, a comprehensive intelligent multisensor
system design architecture with automated method selection, parameterization,
and model analysis is developed with compliance to open-source multi-platform software.It is integrated with an intuitive design environment, which includes visual programming
concept and design information visualizations. Thus, the design effort is minimized as
investigated in three case studies of different application background, e.g., food analysis
(LoX), driving assistance (DeCaDrive), and magnetic localization. Moreover, DAICOX
achieved better quality of the solutions compared to the manual approach in all cases,
where the classification rate was increased by 5.4%, 0.06%, and 11.4% in the LoX,
DeCaDrive, and magnetic localization case, respectively. The design time was reduced
by 81.87% compared to the conventional approach by using DAICOX in the LoX case
study. At the current state of development, a number of novel contributions of the thesis
are outlined below.
Automated processing chain construction and parameterization for the design of
signal processing and feature computation.
Novel dimensionality reduction methods, e.g., GA and PSO based feature selection
and feature weighting with multi-objective feature quality assessment.
A modification of non-parametric compactness measure for feature space quality
assessment.
Decision level sensor fusion architecture based on proposed hierarchical classification
approach using, i.e., H-SVM.
A collection of one-class classification methods and a novel variation, i.e.,
NOVCLASS-R.
Automated design toolboxes supporting front to back design with automated
model selection and information visualization.
In this research work, due to the complexity of the task, neither all of the identified goals
have been comprehensively reached yet nor has the complete architecture definition been
fully implemented. Based on the currently implemented tools and frameworks, ongoing
development of DAICOX is pursuing towards the complete architecture. The potential
future improvements are the extension of method pool with a richer choice of methods
and algorithms, processing chain breeding via graph based evolution approach, incorporation
of intrinsic optimization, and the integration of self-x properties. According to
these features, DAICOX will improve its aptness in designing advanced systems to serve
the increasingly growing technologies of distributed intelligent measurement systems, in
particular, CPS and Industrie 4.0.
Cells and organelles are enclosed by membranes that consist of a lipid bilayer harboring highly
diverse membrane proteins (MPs). These carry out vital functions, and α-helical MPs, in
particular, are of outstanding pharmacological importance, as they comprise more than half of
all drug targets. However, knowledge from MP research is limited, as MPs require membranemimetic
environments to retain their native structures and functions and, thus, are not readily
amenable to in vitro studies. To gain insight into vectorial functions, as in the case of channels
and transporters, and into topology, which describes MP conformation and orientation in the
context of a membrane, purified MPs need to be reconstituted, that is, transferred from detergent
micelles into a lipid-bilayer system.
The ultimate goal of this thesis was to elucidate the membrane topology of Mistic, which is
an essential regulator of biofilm formation in Bacillus subtilis consisting of four α-helices. The
conformational stability of Mistic has been shown to depend on the presence of a hydrophobic
environment. However, Mistic is characterized by an uncommonly hydrophilic surface, and
its helices are significantly shorter than transmembrane helices of canonical integral MPs.
Therefore, the means by which its association with the hydrophobic interior of a lipid bilayer
is accomplished is a subject of much debate. To tackle this issue, Mistic was produced and
purified, reconstituted, and subjected to topological studies.
Reconstitution of Mistic in the presence of lipids was performed by lowering the detergent
concentration to subsolubilizing concentrations via addition of cyclodextrin. To fully exploit
the advantages offered by cyclodextrin-mediated detergent removal, a quantitative model was
established that describes the supramolecular state of the reconstitution mixture and allows
for the prediction of reconstitution trajectories and their cross points with phase boundaries.
Automated titrations enabled spectroscopic monitoring of Mistic reconstitutions in real time.
On the basis of the established reconstitution protocol, the membrane topology of Mistic was
investigated with the aid of fluorescence quenching experiments and oriented circular dichroism
spectroscopy. The results of these experiments reveal that Mistic appears to be an exception
from the commonly observed transmembrane orientation of α-helical MPs, since it exhibits
a highly unusual in-plane topology, which goes in line with recent coarse-grained molecular
dynamics simulations.
The mechanical properties of semi-crystalline polymers depend extremely on their
morphology, which is dependent on the crystallization during processing. The aim of
this research is to determine the effect of various nanoparticles on morphology
formation and tensile mechanical properties of polypropylene under conditions
relevant in polymer processing and to contribute ultimately to the understanding of
this influence.
Based on the thermal analyses of samples during fast cooling, it is found that the
presence of nanoparticle enhances the overall crystallization process of PP. The results
suggest that an increase of the nucleation density/rate is a dominant process that
controls the crystallization process of PP in this work, which can help to reduce the
cycle time in the injection process. Moreover, the analysis of melting behaviors
obtained after each undercooling reveals that crystal perfection increases significantly
with the incorporation of TiO2 nanoparticles, while it is not influenced by the SiO2
nanoparticles.
This work also comprises an analysis of the influence of nanoparticles on the
microstructure of injection-molded parts. The results clearly show multi-layers along
the wall thickness. The spherulite size and the degree of crystallinity continuously
decrease from the center to the edge. Generally both the spherulite size and the degree
of crystallinity decrease with higher the SiO2 loading. In contrast, an increase in the
degree of crystallinity with an increasing TiO2 nanoparticle loading was detected.
The tensile properties exhibit a tendency to increase in the tensile strength as the core
is reached. The tensile strength decreases with the addition of nanoparticles, while the
elongation at break of nanoparticle-filled PP decreases from the skin to the core. With
increasing TiO2 loading, the elongation at break decreases.
We investigate a PDE-ODE system describing cancer cell invasion in a tissue network. The model is an extension of the multiscale setting in [28,40], by considering two subpopulations of tumor cells interacting mutually and with the surrounding tissue. According to the go-or-grow hypothesis, these subpopulations consist of moving and proliferating cells, respectively. The mathematical setting also accommodates the effects of some therapy approaches. We prove the global existence of weak solutions to this model and perform numerical simulations to illustrate its behavior for different therapy strategies.
Integrating Security Concerns into Safety Analysis of Embedded Systems Using Component Fault Trees
(2016)
Nowadays, almost every newly developed system contains embedded systems for controlling system functions. An embedded system perceives its environment via sensors, and interacts with it using actuators such as motors. For systems that might damage their environment by faulty behavior usually a safety analysis is performed. Security properties of embedded systems are usually not analyzed at all. New developments in the area of Industry 4.0 and Internet of Things lead to more and more networking of embedded systems. Thereby, new causes for system failures emerge: Vulnerabilities in software and communication components might be exploited by attackers to obtain control over a system. By targeted actions a system may also be brought into a critical state in which it might harm itself or its environment. Examples for such vulnerabilities, and also successful attacks, became known over the last few years.
For this reason, in embedded systems safety as well as security has to be analyzed at least as far as it may cause safety critical failures of system components.
The goal of this thesis is to describe in one model how vulnerabilities from the security point of view might influence the safety of a system. The focus lies on safety analysis of systems, so the safety analysis is extended to encompass security problems that may have an effect on the safety of a system. Component Fault Trees are very well suited to examine causes of a failure and to find failure scenarios composed of combinations of faults. A Component Fault Tree of an analyzed system is extended by additional Basic Events that may be caused by targeted attacks. Qualitative and quantitative analyses are extended to take the additional security events into account. Thereby, causes of failures that are based on safety as well as security problems may be found. Quantitative or at least semi-quantitative analyses allow to evaluate security measures more detailed, and to justify the need of such.
The approach was applied to several example systems: The safety chain of the off-road robot RAVON, an adaptive cruise control, a smart farming scenario, and a model of a generic infusion pump were analyzed. The result of all example analyses was that additional failure causes were found which would not have been detected in traditional Component Fault Trees. In the analyses also failure scenarios were found that are caused solely by attacks, and that are not depending on failures of system components. These are especially critical scenarios which should not happen in this way, as they are not found in a classical safety analysis. Thus the approach shows its additional benefit to a safety analysis which is achieved by the application of established techniques with only little additional effort.