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Postmortem Analysis of Decayed Online Social Communities: Cascade Pattern Analysis and Prediction
(2018)
Recently, many online social networks, such as MySpace, Orkut, and Friendster, have faced inactivity decay of their members, which contributed to the collapse of these networks. The reasons, mechanics, and prevention mechanisms of such inactivity decay are not fully understood. In this work, we analyze decayed and alive subwebsites from the Stack Exchange platform. The analysis mainly focuses on the inactivity cascades that occur among the members of these communities. We provide measures to understand the decay process and statistical analysis to extract the patterns that accompany the inactivity decay. Additionally, we predict cascade size and cascade virality using machine learning. The results of this work include a statistically significant difference of the decay patterns between the decayed and the alive subwebsites. These patterns are mainly cascade size, cascade virality, cascade duration, and cascade similarity. Additionally, the contributed prediction framework showed satisfactorily prediction results compared to a baseline predictor. Supported by empirical evidence, the main findings of this work are (1) there are significantly different decay patterns in the alive and the decayed subwebsites of the Stack Exchange; (2) the cascade’s node degrees contribute more to the decay process than the cascade’s virality, which indicates that the expert members of the Stack Exchange subwebsites were mainly responsible for the activity or inactivity of the Stack Exchange subwebsites; (3) the Statistics subwebsite is going through decay dynamics that may lead to it becoming fully-decayed; (4) the decay process is not governed by only one network measure, it is better described using multiple measures; (5) decayed subwebsites were originally less resilient to inactivity decay, unlike the alive subwebsites; and (6) network’s structure in the early stages of its evolution dictates the activity/inactivity characteristics of the network.
The extraction kinetics of polyphenols, which are leached from red vine leaves, are studied and evaluated using a laboratory robot and nonconventional processing techniques such as ultrasonic (US)-, microwave (MW)-, and pulsed electric field (PEF)-assisted extraction processes. The robotic high-throughput screening reveals optimal extraction conditions at a pH value of 2.5, a temperature of 56 °C, and a solvent mixture of methanol:water:HCl of 50:49:1 v/v/v. Nonconventional processing techniques, such as MW- and US-assisted extraction, have the fastest kinetics and produce the highest polyphenol yield. The non-conventional techniques yield is 2.29 g/L (MW) resp. 2.47 g/L (US) for particles that range in size from 450 to 2000 µm and 2.20 g/L (MW) resp. 2.05 g/L (US) for particles that range from 2000 to 4000 µm. PEF has the lowest yield of polyphenols with 0.94 g/L (450–2000 µm), resp. 0.64 g/L (2000–4000 µm) in comparison to 1.82 g/L (2000 to 4000 µm) in a standard stirred vessel (50 °C). When undried red vine leaves (2000 to 4000 µm) are used the total phenol content is 1.44 g/L with PEF.
The core muscles play a central role in stabilizing the head during headers in soccer. The objective of this study was to examine the influence of a fatigued core musculature on the acceleration of the head during jump headers and run headers. Acceleration of the head was measured in a pre-post-design in 68 soccer players (age: 21.5 ± 3.8 years, height: 180.0 ± 13.9 cm, weight: 76.9 ± 8.1 kg). Data were recorded by means of a telemetric 3D acceleration sensor and with a pendulum header. The treatment encompassed two exercises each for the ventral, lateral, and dorsal muscle chains. The acceleration of the head between pre- and post-test was reduced by 0.3 G (p = 0.011) in jump headers and by 0.2 G (p = 0.067) in run headers. An additional analysis of all pretests showed an increased acceleration in run headers when compared to stand headers (p < 0.001) and jump headers (p < 0.001). No differences were found in the sub-group comparisons: semi-professional vs. recreational players, offensive vs. defensive players. Based on the results, we conclude that the acceleration of the head after fatiguing the core muscles does not increase, which stands in contrast to postulated expectations. More tests with accelerated soccer balls are required for a conclusive statement.
Biological soil crusts (biocrusts) are a common element of the Queensland (Australia) dry savannah ecosystem and are composed of cyanobacteria, algae, lichens, bryophytes, fungi and heterotrophic bacteria. Here we report how the CO2 gas exchange of the cyanobacteria-dominated biocrust type from Boodjamulla National Park in the north Queensland Gulf Savannah responds to the pronounced climatic seasonality and on their quality as a carbon sink using a semi-automatic cuvette system. The dominant cyanobacteria are the filamentous species Symplocastrum purpurascens together with Scytonema sp. Metabolic activity was recorded between 1 July 2010 and 30 June 2011, during which CO2 exchange was only evident from November 2010 until mid-April 2011, representative of 23.6 % of the 1-year recording period. In November at the onset of the wet season, the first month (November) and the last month (April) of activity had pronounced respiratory loss of CO2. The metabolic active period accounted for 25 % of the wet season and of that period 48.6 % was net photosynthesis (NP) and 51.4 % dark respiration (DR). During the time of NP, net photosynthetic uptake of CO2 during daylight hours was reduced by 32.6 % due to water supersaturation. In total, the biocrust fixed 229.09 mmol CO2 m−2 yr−1, corresponding to an annual carbon gain of 2.75 g m−2 yr−1. Due to malfunction of the automatic cuvette system, data from September and October 2010 together with some days in November and December 2010 could not be analysed for NP and DR. Based on climatic and gas exchange data from November 2010, an estimated loss of 88 mmol CO2 m−2 was found for the 2 months, resulting in corrected annual rates of 143.1 mmol CO2 m−2 yr−1, equivalent to a carbon gain of 1.7 g m−2 yr−1. The bulk of the net photosynthetic activity occurred above a relative humidity of 42 %, indicating a suitable climatic combination of temperature, water availability and light intensity well above 200 µmol photons m−2 s−1 photosynthetic active radiation. The Boodjamulla biocrust exhibited high seasonal variability in CO2 gas exchange pattern, clearly divided into metabolically inactive winter months and active summer months. The metabolic active period commences with a period (of up to 3 months) of carbon loss, likely due to reestablishment of the crust structure and restoration of NP prior to about a 4-month period of net carbon gain. In the Gulf Savannah biocrust system, seasonality over the year investigated showed that only a minority of the year is actually suitable for biocrust growth and thus has a small window for potential contribution to soil organic matter.
Background: Aneuploidy, or abnormal chromosome numbers, severely alters cell physiology and is widespread in
cancers and other pathologies. Using model cell lines engineered to carry one or more extra chromosomes, it has
been demonstrated that aneuploidy per se impairs proliferation, leads to proteotoxic as well as replication stress
and triggers conserved transcriptome and proteome changes.
Results: In this study, we analysed for the first time miRNAs and demonstrate that their expression is altered in
response to chromosome gain. The miRNA deregulation is independent of the identity of the extra chromosome
and specific to individual cell lines. By cross-omics analysis we demonstrate that although the deregulated miRNAs
differ among individual aneuploid cell lines, their known targets are predominantly associated with cell development,
growth and proliferation, pathways known to be inhibited in response to chromosome gain. Indeed, we show that up
to 72% of these targets are downregulated and the associated miRNAs are overexpressed in aneuploid cells, suggesting
that the miRNA changes contribute to the global transcription changes triggered by aneuploidy. We identified
hsa-miR-10a-5p to be overexpressed in majority of aneuploid cells. Hsa-miR-10a-5p enhances translation of a
subset of mRNAs that contain so called 5’TOP motif and we show that its upregulation in aneuploids provides
resistance to starvation-induced shut down of ribosomal protein translation.
Conclusions: Our work suggests that the changes of the microRNAome contribute on one hand to the adverse
effects of aneuploidy on cell physiology, and on the other hand to the adaptation to aneuploidy by supporting
translation under adverse conditions.
Keywords: Aneuploidy, Cancer, miRNA, miR-10a-5p, Trisomy
Areal optical surface topography measurement is an emerging technology for industrial quality control. However, neither calibration procedures nor the utilization of material measures are standardized. State of the art is the calibration of a set of metrological characteristics with multiple calibration samples (material measures). Here, we propose a new calibration sample (artefact) capable of providing the entire set of relevant metrological characteristics within only one single sample. Our calibration artefact features multiple material measures and is manufactured with two-photon laser lithography (direct laser writing, DLW). This enables a holistic calibration of areal topography measuring instruments with only one series of measurements and without changing the sample.
III/V semiconductor quantum dots (QD) are in the focus of optoelectronics research for about 25 years now. Most of the work
has been done on InAs QD on GaAs substrate. But, e.g., Ga(As)Sb (antimonide) QD on GaAs substrate/buffer have also gained
attention for the last 12 years.There is a scientific dispute on whether there is a wetting layer before antimonide QD formation, as
commonly expected for Stransky-Krastanov growth, or not. Usually ex situ photoluminescence (PL) and atomic force microscope
(AFM) measurements are performed to resolve similar issues. In this contribution, we show that reflectance anisotropy/difference
spectroscopy (RAS/RDS) can be used for the same purpose as an in situ, real-time monitoring technique. It can be employed not
only to identify QD growth via a distinct RAS spectrum, but also to get information on the existence of a wetting layer and its
thickness. The data suggest that for antimonide QD growth the wetting layer has a thickness of 1 ML (one monolayer) only.
Neuronal inhibition is mediated by glycine and/or GABA. Inferior colliculus (IC) neurons receive glycinergic and GABAergic
inputs, whereas inhibition in hippocampus (HC) predominantly relies on GABA. Astrocytes heterogeneously
express neurotransmitter transporters and are expected to adapt to the local requirements regarding neurotransmitter
homeostasis. Here we analyzed the expression of inhibitory neurotransmitter transporters in IC and HC astrocytes using
whole-cell patch-clamp and single-cell reverse transcription-PCR. We show that most astrocytes in both regions expressed
functional glycine transporters (GlyTs). Activation of these transporters resulted in an inward current (IGly) that
was sensitive to the competitive GlyT1 agonist sarcosine. Astrocytes exhibited transcripts for GlyT1 but not for
GlyT2. Glycine did not alter the membrane resistance (RM) arguing for the absence of functional glycine receptors (GlyRs).
Thus, IGly was mainly mediated by GlyT1. Similarly, we found expression of functional GABA transporters (GATs) in all IC
astrocytes and about half of the HC astrocytes. These transporters mediated an inward current (IGABA) that was sensitive to
the competitive GAT-1 and GAT-3 antagonists NO711 and SNAP5114, respectively. Accordingly, transcripts for GAT-1 and
GAT-3 were found but not for GAT-2 and BGT-1. Only in hippocampal astrocytes, GABA transiently reduced
RM demonstrating the presence of GABAA receptors (GABAARs). However, IGABA was mainly not contaminated
by GABAAR-mediated currents as RM changes vanished shortly after GABA application. In both regions, IGABA
was stronger than IGly. Furthermore, in HC the IGABA/IGly ratio was larger compared to IC. Taken together, our
results demonstrate that astrocytes are heterogeneous across and within distinct brain areas. Furthermore, we
could show that the capacity for glycine and GABA uptake varies between both brain regions.
For modeling approaches in systems biology, knowledge of the absolute abundances of cellular proteins is essential. One way to gain this knowledge is the use of quantification concatamers (QconCATs), which are synthetic proteins consisting of proteotypic peptides derived from the target proteins to be quantified. The QconCAT protein is labeled with a heavy isotope upon expression in E. coli and known amounts of the purified protein are spiked into a whole cell protein extract. Upon tryptic digestion, labeled and unlabeled peptides are released from the QconCAT and the native proteins, respectively, and both are quantified by LC-MS/MS. The labeled Q-peptides then serve as standards for determining the absolute quantity of the native peptides/proteins. Here we have applied the QconCAT approach to Chlamydomonas reinhardtii for the absolute quantification of the major proteins and protein complexes driving photosynthetic light reactions in the thylakoid membranes and carbon fixation in the pyrenoid. We found that with 25.2 attomol/cell the Rubisco large subunit makes up 6.6% of all proteins in a Chlamydomonas cell and with this exceeds the amount of the small subunit by a factor of 1.56. EPYC1, which links Rubisco to form the pyrenoid, is eight times less abundant than RBCS, and Rubisco activase is 32-times less abundant than RBCS. With 5.2 attomol/cell, photosystem II is the most abundant complex involved in the photosynthetic light reactions, followed by plastocyanin, photosystem I and the cytochrome b6/f complex, which range between 2.9 and 3.5 attomol/cell. The least abundant complex is the ATP synthase with 2 attomol/cell. While applying the QconCAT approach, we have been able to identify many potential pitfalls associated with this technique. We analyze and discuss these pitfalls in detail and provide an optimized workflow for future applications of this technique.
Cyanobacteria of biological soil crusts (BSCs) represent an important part of circumpolar
and Alpine ecosystems, serve as indicators for ecological condition and climate
change, and function as ecosystem engineers by soil stabilization or carbon and nitrogen
input. The characterization of cyanobacteria from both polar regions remains
extremely important to understand geographic distribution patterns and community
compositions. This study is the first of its kind revealing the efficiency of combining
denaturing gradient gel electrophoresis (DGGE), light microscopy and culture-based
16S rRNA gene sequencing, applied to polar and Alpine cyanobacteria dominated
BSCs. This study aimed to show the living proportion of cyanobacteria as an extension
to previously published meta-transcriptome
data of the same study sites.
Molecular fingerprints showed a distinct clustering of cyanobacterial communities
with a close relationship between Arctic and Alpine populations, which differed from
those found in Antarctica. Species richness and diversity supported these results,
which were also confirmed by microscopic investigations of living cyanobacteria
from the BSCs. Isolate-based
sequencing corroborated these trends as cold biome
clades were assigned, which included a potentially new Arctic clade of Oculatella.
Thus, our results contribute to the debate regarding biogeography of cyanobacteria
of cold biomes.