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Weak memory consistency models capture the outcomes of concurrent
programs that appear in practice and yet cannot be explained by thread
interleavings. Such outcomes pose two major challenges to formal
methods. First, establishing that a memory model satisfies its
intended properties (e.g., supports a certain compilation scheme) is
extremely error-prone: most proposed language models were initially
broken and required multiple iterations to achieve soundness. Second,
weak memory models make verification of concurrent programs much
harder, as a result of which there are no scalable verification
techniques beyond a few that target very simple models.
This thesis presents solutions to both of these problems.
First, it shows that the relevant metatheory of weak memory
models can be effectively decided (sparing years of manual proof
efforts), and presents Kater, a tool that can answer metatheoretic
queries in a matter of seconds. Second, it presents GenMC, the first
(and only) scalable stateless model checker that is parametric in the
choice of the memory model, often improving the prior state of the art
by orders of magnitude.
This thesis outlines the development of thermoplastic-graphite based plate heat exchangers from material screening to operation including performance evaluation and fouling investi-gations. Polypropylene and polyphenylene sulfide as matrix and graphite as filler were cho-sen as feedstock materials, as they possess a low density and excellent corrosion resistance at a comparatively low price.
For the purpose of material screening, custom-made polymer composite plates with a plate thickness of 1-2 mm and a filler content of up to 80 wt.% were investigated for their thermal and mechanical suitability with regard to their use in plate heat exchangers. Three-point flexural tests show that the loading of polypropylene with graphite leads to mechanical prop-erties that allow the composites to be applied as corrugated heat exchanger plates. The simu-lated maximum overpressure is greater than 7 bar, depending on the wall thickness. The thermal conductivity of the composites was increased by a factor of 12.5 compared to pure polypropylene, resulting in thermal conductivities of up to 2.74 W/mK.
The fabrication of the developed corrugated heat exchanger plates, with a thickness between 0.85 mm and 2.5 mm and a heat transfer surface area of 11.13·10-3 m² was carried out via processes that can be automized, namely extrusion and embossing. With the manufactured plate heat exchanger, overall heat transfer coefficients are determined over a wide range of operating conditions (Re = 200 - 1600), which are used to validate a plate heat exchanger model and consequently to compare the composites with conventional materials. The em-bossing, which seems to result in a shift of the internal graphite structure, leads to a further improvement of the thermal conductivity by 7-20 %, in addition to the impact of the filler. With low plate thicknesses, overall heat transfer coefficients of up to 1850 W/m²K could be obtained. Considering the low density of the manufactured thermal plates, this ensures com-parable performance with metallic materials over a wide range of process conditions (Re = 200 - 4000).
The fouling kinetics and amount of calcium sulfate and calcium carbonate, respectively, on different polypropylene/graphite composites in a flat plate heat exchanger and the developed chevron type plate heat exchanger are determined and compared to the reference material stainless steel. For a straight evaluation of the fouling susceptibility of the materials the for-mation of bubbles on the materials is considered by optical imaging or excluded by a degas-ser. The results are interpreted using surface free energy and roughness of the surfaces. The results show that if bubble formation is avoided, the polymer composites have a very low fouling tendency compared to stainless steel, which is attributed to the low surface free ener-gies of approximately 25 mN/m. This is particularly the case when turbulent flows are pre-sent, as is in plate heat exchangers or when sandblasted specimen are used. Sandblasting also continues to increase heat transfer compared to untreated samples by increasing thermal conductivity and creating local turbulences. Depending on the test conditions, the fouling resistance formed on the stainless steel surface is an order of magnitude greater than on the flat plate polymer composites. In addition, the fouling layers adhere only weakly to the com-posites, which indicates an easy cleaning in place after the formation of deposits. The fouling investigations in the plate heat exchanger reveal sensitivity to calcium sulfate fouling, how-ever, CFD simulations indicate that this is due to flow maldistribution and not the actual pol-ymer composite materials.
Plant-specific factors affecting short-range attraction and oviposition of European grapevine moths
(2024)
The spread of pests and pathogens is increasingly intensified by climate change and globalization. Two of the most serious insect pests threating European viticulture are the European grape berry moth, Eupoecilia ambiguella (Hübner) and the European grapevine moth Lobesia botrana (Denis & Schiffermüller). Larvae feed on fructiferous organs of grapevine Vitis vinifera, resulting in high yield and quality losses. Under the aspects of integrated pest management, insecticide measures are only reasonable when other control strategies become ineffective. In order to support the development of novel decision support system for the application of insecticides, the aim of this thesis was to decipher plant-specific factors, which affect the short-range attraction and oviposition of L. botrana and E. ambiguella.
The focus was set on the visual, volatile, tactile and gustatory stimuli provided by their host plant after settlement. The use of artificial surfaces as model plant showed that oviposition of both species is affected by the color, the shape and the texture of the oviposition site. To explain a susceptibility of certain grapevine cultivars and phenological stages of the berries to egg infestations, we analysed and compared the chemical composition of the epicuticular waxes of the berry surface as well as the volatile organic compounds emitted by the berries. Thereby it turned out that the attractiveness to wax extracts decreased during ripening of the berries, highlighting a preference of earlier phenological stages of the berries for oviposition. In addition, grapevine cultivars exhibited variations in their volatile composition. The principle components perceived by female’s antennae could not explain the differentiation between cultivars, suggesting volatiles do not trigger orientation to certain cultivars. Furthermore, a method was developed to measure real-time behavioural response of female moths to volatiles. The setup allowed to quantify the orientation to a volatile source as well as movements of the antennae and ovipositor. They could be linked to the olfactory and gustatory perception of volatiles during the evaluation of suitable host plants for oviposition. In addition, the risk of potential alternative host plants in the vicinity of the vineyard was investigated. This confirmed that L. botrana in particular prefers the stimuli provided by some plants to those of grapevine. Overall, the results suggest that during oviposition, volatiles emitted by the plants and the composition of the plant surface are the most important factors for host plant differentiation.
Recent research suggests that the common core of all aversive traits can be understood through the Dark Factor of Personality (D). Previously, the overlap among aversive traits has also been described as the low pole of HEXACO Honesty-Humility. Relying on longitudinal data and a range of theoretically derived outcome criteria, we test in four studies (total N > 2,500) whether and how D and low Honesty-Humility differ. Although the constructs shared around 66% of variance (meta-analytically aggregated across all studies), they longitudinally differently accounted for diverse aversive traits and showed theoretically meaningful and distinct associations to pretentiousness, distrust-related beliefs, and empathy. These results suggest that D and low Honesty-Humility are best understood as strongly overlapping, yet functionally different and nomologically distinct constructs.
Production, purification and analysis of novel peptide antibiotics from terrestrial cyanobacteria
(2024)
Cyanobacteria are a known source for bioactive compounds, of which several also show antibiotic activity. In regard to the growing number of multi-resistant pathogens, the search for novel antibiotic substances is of great importance and unexploited sources should be explored. So, this thesis initially dealt with the identification of productive strains, especially within the group of the terrestrial cyanobacteria, which are less well studied than marine and freshwater strains. Amongst these, Chroococcidiopsis cubana, an extremely desiccation and radiation tolerant, unicellular cyanobacterium was found to produce an extracellular antimicrobial metabolite effective against the Gram-positive indicator bacterium Micrococcus luteus as well as the pathogenic yeast Candida auris. However, as the sole identification of a productive cyanobacterium is not sufficient for further analysis and a future production scale-up, the second part of this thesis targeted the identification of compound synthesis prerequisites. As a result, a limitation of nitrogen was shown to be the production trigger, a finding that was used for the establishment of a continuous production system. The increased compound formation was then used for purification and analysis steps. As a second approach, in silico identified bacteriocin gene clusters from C. cubana were cloned and heterologously expressed in Escherichia coli. By this, the bacteriocin B135CC was identified as a strong bacteriolytic agent, active predominantly against the Gram-positive strains Staphylococcus aureus and Mycobacterium phlei. The peptide showed no cytotoxic effects against mouse neuroblastoma (N2a-) cells and a high temperature tolerance up to 60 °C. In order to facilitate the whole project, two standard protocols, specifically adapted for the work with cyanobacteria, were established. First, a method for a quick and easy in vivo vitality estimation of phototrophic cells and second, an approach for a high throughput determination of nitrate concentrations in microalgal cultures. Both methods greatly helped to proceed the main objectives of this work, the first one by simplifying the development of suitable cryopreservation protocols for individual cyanobacteria strains and the second one by accelerating the determination of the optimal nitrate concentration for the production of the antimicrobial compound from C. cubana. In the course of this cultivation optimization, the ability of cyanobacteria to utilize organic carbon sources for an accelerated cell growth was examined in greater detail. It could be shown that C. cubana reaches significantly higher growth rates when mixotrophically cultivated with fructose or glucose. Interestingly, this effect was even further enhanced when light intensity was decreased. Under these low-light conditions, phototrophically cultivated C. cubana cells showed a clearly decreased cell growth. This effect might be extremely useful for a quick and economic preparation of precultures.
The ability to sense and respond to different environmental conditions allows living organisms to adapt quickly to their surroundings. In order to use light as a source of information, plants, fungi, and bacteria employ phytochromes. With their ability to detect far-red and red light, phytochromes constitute a major photoreceptor family. Bacterial phytochromes (BphPs) are composed of an apo-phytochrome and an open-chain tetrapyrrole, the chromophore biliverdin IXα, which mediates the photosensory properties. Depending on the photoexcitation and the quality of the incident light, phytochromes interconvert between two photoconvertible parental states: the red light-absorbing Pr-form and the far-red light-absorbing Pfr-form. In contrast to prototypical phytochromes, with a thermal stable Pr ground state, there is a group of bacterial phytochromes that exhibit dark reversion from the Pr- to the Pfr-form. These special proteins are classified as bathy phytochromes and range across different classes of bacteria. Moreover, the majority of BphPs act as sensor histidine kinases in two-component regulatory systems. The light-triggered conformational change results in the autophosphorylation of the histidine kinase domain and the transphosphorylation of an associated response regulator, inducing a cellular response. Spectroscopic analysis utilizing homologously produced protein identified PaBphP, the histidine kinase of the human opportunistic pathogen Pseudomonas aeruginosa, as a bathy phytochrome. Intensive research on PaBphP revealed evidence that the interconversion between its physiological active and inactive states is influenced by light and darkness rather than far-red and red light. In order to conduct a comprehensive systematic analysis, further bacterial phytochromes were investigated regarding their biochemical and spectroscopic behavior, as well as their autokinase activity. In addition to PaBphP, this work employs the bathy phytochromes AtBphP2, AvBphP2, XccBphP from the non-photosynthetic plant pathogens Agrobacterium tumefaciens, Allorhizobium vitis, Xanthomonas campestris, as well as RtBphP2 from the soil bacterium Ramlibacter tataouinensis. All investigated BphPs displayed a bathy-typical behavior by developing a distinct Pr-form under far-red light conditions and undergoing dark reversion to their Pfr-form. Different Pr/Pfr-fractions can be identified among the BphP populations in varying natural light conditions, including red or blue light. The Pr-form is considered as the active form due to autophosphorylation activity in the heterologously produced phytochromes when exposed to light. In the absence of light, associated with the development of the Pfr-form, the phytochromes exhibited disabled or strongly reduced autokinase activity. Additionally, light-triggered phosphorylation was observed for the response regulator PaAlgB, which is linked to the phytochrome of P. aeruginosa. This study presents the first comparative investigation of numerous bathy phytochromes under identical conditions. The work addressed a gap in the literature by providing quantitative correlation between kinase activity and calculated Pr/Pfr-fractions obtained from spectroscopic measurements. The biological role of PaBphP was partially elucidated through phenotypic characterization employing P. aeruginosa mutant and overexpression strains. The generation of a functional model was possible by considering the postulated functions of the other phytochromes found in the literature. In summary, bathy BphPs are hypothesized to modulate bacterial virulence according to the circadian day/night rhythm of their hosts. The pathogens are believed to reduce their virulence during daylight hours to evade immune and defense reactions, while increasing their virulence during the evening and night, enabling more effective infections.
Functional structures as well as materials provided by nature have always been a great source of inspiration for new technologies. Adapting and improving the discovered concepts, however, demands a detailed understanding of their working principles, while employing natural materials for fabrication tasks requires suitable functionalization and modification.
In this thesis, the white scales of the beetle Cyphochilus are examined in order to reveal unknown aspects of their light transport properties. In addition, the monomer of the material they are made of is utilized for 3D microfabrication.
White beetle scales have been fascinating scientists for more than a decade because they display brilliant whiteness despite their small thickness and the low refractive index contrast. Their optical properties arise from highly efficient light scattering within the disordered intra-scale network structure.
To gain a better understanding of the scattering properties, several previous studies have investigated the light transport and its connection to the structural anisotropy with the aid of diffusion theory. While this framework allows to relate the light scattering to macroscopic transport properties, an accurate determination of the effective refractive index of the structure is required. Due to its simplicity, the Maxwell-Garnett mixing rule is frequently used for this task, although its constraint to particle and feature sizes much smaller than the wavelength is clearly violated for the scales.
To provide a correct calculation of the effective refractive index, here, finite-difference time-domain simulations are used to systematically examine the impact of size effects on the effective refractive index. Deploying this simulation approach, the Maxwell-Garnett mixing rule is shown to break down for large particles. In contrast, it is found that a quadratic polynomial function describes the effective refractive index in close approximation, while its coefficients can be obtained from an empirical linear function. As a result, a simple mixing rule is reported that unambiguously surpasses classical mixing rules when composite media containing large feature sizes are considered. This is important not only for the accurate description of white beetle scales, but also for other turbid media, such as biological tissues in opto-biomedical diagnostics.
Describing light transport by means of diffusion theory moreover neglects any coherent effects, such as interference. Hence, their impact on the generation of brilliant whiteness is currently unknown. To shed a light on their role, spatial- and time-resolved light scattering spectromicroscopy is applied to investigate the scales and a model structure of them based on disordered Bragg stacks. For both structures the occurrence of weakly localized photonic modes, i.e., closed scattering loops, is observed, which is further verified in accompanying simulations. As shown in this thesis, leakage from these random photonic modes contributes at least 20% to the overall reflected light. This reveals the importance of coherent effects for a complete description of the underlying light transport properties; an aspect that is entirely missing in the purely diffusive transport presumed so far. Identifying the importance of weak localization for the generation of brilliant whiteness paves the way to further enhance the design of efficient optical scattering media, an issue that recently drawn great attention.
Unlike their plant-based counterparts, rigid carbohydrates, such as chitin, are currently unavailable for 3D microfabrication via direct laser writing, despite their great significance in the animal kingdom for the construction of functional microstructures. To overcome this gap, the monomeric unit of chitin, N-acetyl-D-glucosamine, is here functionalized to serve as a photo-crosslinkable monomer in a non-hydrogel photoresist. Since all previous photoresists based on animal carbohydrates are in the form of hydrogel formulations, a new group of photoresists is established for direct laser writing.
Moreover, it is exhibited that the sensitization effect, previously used only in the context of UV curing, can be successfully transferred to direct laser writing to increase the maximum writing speed. This effect is based on the beneficial combination of two photoinitiators.
In this, one photoinitiator is an efficient crosslinking agent for the monomer used, but a rather poor two-photon absorber. The other photoinitiator (called sensitizer) possesses, conversely, a much higher two-photon absorption coefficient at the applied wavelength but is not well suited as a crosslinking agent. In combination, the energy absorbed by the sensitizer is passed to the photoinitiator, resulting in the formation of radicals needed to start the polymerization. As this greatly increases the rate at which the photoinitiator is radicalized, resists containing a photoinitiator and a sensitizer are shown to outperform resists containing only one of the components. Deploying the sensitization effect in direct laser writing therefore offers a simple way to individually tune the crosslinking ability and the two-photon absorption properties by combining existing compounds, compared to the costly chemical synthesis of novel, customized photoinitiators.
In contrast to motorbike tyres, whose friction during cornering has to be as high as possible, the desired effect in skiing is the opposite, that of low friction. The reduced friction between skis and ice or snow is made possible by a film of meltwater that forms as a function of friction power. To support this friction mechanism, skis are waxed with different waxes in both hobby and professional sports, depending on a variety of conditions. Waxes with fluorine additives show best performance in most conditions, corresponding to the lowest friction coefficients. However, for health and environmental reasons, the International Ski Federation (FIS) and the Biathlon Un-ion (IBU) have imposed a complete ban on fluorine additives at all FIS races and IBU events with effect from the 2023/2024 season. As a result, wax manufacturers are required to develop and extensively test fluorine-free waxes in order to remain competitive.
Traditional tests take place either indoors or outdoors in the field. Athletes, who complete a particular distance and whose time is measured, also note the impres-sions that the prepared skis provide to the skiers. The time and cost involved in nu-merous individual tests is a drawback, and the presence of only a single type of snow in the hall or field, air resistance, changing environmental conditions and var-iations in the athlete's movement, limit the depth of information. For the need of re-ducing the time-consuming procedure of indoor and outdoor tests, a tribometer of-fers a solution where friction measurements can be performed on a laboratory scale. Due to the consistent adjustable conditions such as temperature, speed and load applied to the friction partners, scientific studies can be carried out with reduced dis-turbance variables. At present, the tribometric results of laboratory instruments for predicting friction values do not translate into application in practice. The reasons for this are the compromises that have to be made in the design of the tribometers.
This work reviews the existing tribometers for their operating conditions and con-firms the need for a scientific method of characterising different waxes. In order to fill the gap between friction results obtained in laboratory tests which cannot yet be used in the selection of waxes, and traditional field tests, this thesis is dedicated to the methodical design and manufacture of a linear tribometer capable of measuring friction between a ski base made of UHMWPE (ultra high molecular weight polyeth-ylene) and an ice sample. The tribometer provides for the first time results that allow differentiating be-tween different modified waxes with regard to their running performance. Friction-influencing factors such as speed, temperature and the surface pressure below the ski base can be adjusted within the range relevant for ski sports. Furthermore, the laboratory-scale test stand, which is located in a cold chamber, is capable of ac-commodating not only typical ski jumping base lengths and widths, but also cross-country and alpine ski bases. To verify the tribometer, a ski base is treated with three waxes of different fluorine content and measured comparatively. With a minimum of 95% confidence, the friction differences between the tested waxes depending on their fluorine content is validated and proven at the end of this work.
Pervasive human impacts rapidly change freshwater biodiversity. Frequently recorded exceedances of regulatory acceptable thresholds by pesticide concentrations suggest that pesticide pollution is a relevant contributor to broad-scale trends in freshwater biodiversity. A more precise pre-release Ecological Risk Assessment (ERA) might increase its protectiveness, consequently reducing the likelihood of unacceptable effects on the environment. European ERA currently neglects possible differences in sensitivity between exposed ecosystems. If the taxonomic composition of assemblages would differ systematically among certain types of ecosystems, so might their sensitivity toward pesticides. In that case, a single regulatory threshold would be over- or underprotective.
In this thesis, we evaluate (1) whether the assemblage composition of macroinvertebrates, diatoms, fishes, and aquatic macrophytes differs systematically between the types of a European river typology system, and (2) whether these taxonomical differences engender differences in sensitivity toward pesticides. While a selection of ecoregions is available for Europe, only a single typology system that classifies individual river segments is available at this spatial scale - the Broad River Types (BRT).
In the first two papers of this thesis, we compiled and prepared large databases of macroinvertebrate (paper one), diatom, fish, and aquatic macrophyte (paper two) occurrences throughout Europe to evaluate whether assemblages are more similar within than among BRT types. Additionally, we compared its performance to that of different ecoregion systems. We employed multiple tests to evaluate the performances, two of which were also designed in the studies. All typology systems failed to reach common quality thresholds for the evaluated metrics for most taxa. Nonetheless, performance differed markedly between typology systems and taxa, with the BRT often performing worst. We showed that currently available, European freshwater typology systems are not well suited to capture differences in biotic communities and suggest several possible amelioration.
In the third study, we evaluated whether ecologically meaningful differences in sensitivity exist between BRT types. To this end, we predicted the sensitivity of macroinvertebrate assemblages across Europe toward Atrazine, copper, and Imidacloprid using a hierarchical species sensitivity distribution model. The predicted assemblage sensitives differed only marginally between BRT types. The largest difference between
median river type sensitivities was a factor of 2.6, which is far below the assessment factor suggested for such models (6), as well as the factor of variation commonly observed between toxicity tests of the same species-compound pair (7.5 for copper). Our results don’t support the notion that a type-specific ERA might improve the accuracy of thresholds. However, in addition to the taxonomic composition the bioavailability of chemicals, the interaction with other stressors, and the sensitivity of a given species might differ between river types.
Mechanistic disease spread models for different vector borne diseases have been studied from the 19th century. The relevance of mathematical modeling and numerical simulation of disease spread is increasing nowadays. This thesis focuses on the compartmental models of the vector-borne diseases that are also transmitted directly among humans. An example of such an arboviral disease that falls under this category is the Zika Virus disease. The study begins with a compartmental SIRUV model and its mathematical analysis. The non-trivial relationship between the basic reproduction number obtained through two methods have been discussed. The analytical results that are mathematically proven for this model are numerically verified. Another SIRUV model is presented by considering a different formulation of the model parameters and the newly obtained model is shown to be clearly incorporating the dependence on the ratio of mosquito population size to human population size in the disease spread. In order to incorporate the spatial as well as temporal dynamics of the disease spread, a meta-population model based on the SIRUV model was developed. The space domain under consideration are divided into patches which may denote mutually exclusive spatial entities like administrative areas, districts, provinces, cities, states or even countries. The research focused only on the short term movements or commuting behavior of humans across the patches. This is incorportated in the multi-patch meta-population model using a matrix of residence time fractions of humans in each patches. Mathematically simplified analytical results are deduced by which it is shown that, for an exemplary scenario that is numerically studied, the multi-patch model also admits the threshold properties that the single patch SIRUV model holds. The relevance of commuting behavior of humans in the disease spread has been presented using the numerical results from this model. The local and non-local commuting are incorporated into the meta-population model in a numerical example. Later, a PDE model is developed from the multi-patch model.